Locus 5000

Sequence ID 2L_DroMel_CAF1
Location 14,379,834 – 14,379,927
Length 93
Max. P 0.698795
window7941

overview

Window 1

Location 14,379,834 – 14,379,927
Length 93
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 79.75
Mean single sequence MFE -23.47
Consensus MFE -16.56
Energy contribution -16.50
Covariance contribution -0.06
Combinations/Pair 1.07
Mean z-score -1.37
Structure conservation index 0.71
SVM decision value 0.35
SVM RNA-class probability 0.698795
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14379834 93 + 22407834
-----CUAA-CCACA-----CACCUUAUAGCCCUGUUUGAAACUGCGACAAUCGUAGUCGAAAUUAUGCUGCAAACCCUGCAGAAAGGCGAAGAACCCAUUUUU
-----....-.....-----...(((...(((...(((((..(((((.....))))))))))......(((((.....)))))...))).)))........... ( -19.90)
>DroPse_CAF1 1803 103 + 1
UCUGUAUAA-UGAUACCUUAUACCUUAUAGCCCUGCUUAAAGCUGCGGCAAUCGUAGUCAAAGUUGUGCUGCAGUCCCUGCAGAAAGGCAAAGAAACCAUUGCC
(((((((((-.......))))))......(((((((.....(((((((((..(.........)...)))))))))....))))...)))..))).......... ( -26.50)
>DroEre_CAF1 1026 96 + 1
-----GUUUUUCUCAC---ACACCUUGUAGCCCUGUUUGAAACUGCGGCAAUCGUAGUCGAAAUUGUGCUGCAAGCCCUGCAGAAAGGCGAAGAAACCAUUCUU
-----((((((((((.---....((((((((.(..(((((..(((((.....))))))))))...).))))))))...)).)))))))).(((((....))))) ( -27.90)
>DroYak_CAF1 688 93 + 1
-----CUUU---UCAC---ACACCUUAUAGCCCUGUUUGAAACUGCGACAAUCGUAGUCGAAAUUGUGCUGCAAACCCUGCAGGAAAGCAAAAAACCCAUUCUU
-----((((---((..---.........(((.(..(((((..(((((.....))))))))))...).)))(((.....))).))))))................ ( -17.90)
>DroAna_CAF1 14184 98 + 1
UCC--CUAA-UGGUAC---ACACCUUGUAGCCCUGCUUAAAACUGCGGCAAUCGUAGUCGAAAUUAUGCUGCAAGCCCUGCAGGAAGGCAAAGAACCCAUUCUU
...--..((-((((((---(.....))))(((((((.......(((((((.(((....))).....)))))))......))))...))).......)))))... ( -23.72)
>DroPer_CAF1 3348 103 + 1
UCUGUAUAA-UGAUACCUUAUACCUUAUAGCCCUGUUUAAAGCUGCGGCAAUCGUAGUCAAAGUUGUGCUGCAGUCCCUGCAGAAAGGCAAAGAAACCAUUGCC
(((((((((-.......))))))......(((((((.....(((((((((..(.........)...)))))))))....))))...)))..))).......... ( -24.90)
>consensus
_____CUAA_UGACAC___ACACCUUAUAGCCCUGUUUAAAACUGCGGCAAUCGUAGUCGAAAUUGUGCUGCAAACCCUGCAGAAAGGCAAAGAAACCAUUCUU
.............................(((.........((((((.....))))))..........(((((.....)))))...)))............... (-16.56 = -16.50 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:12 2006