Locus 50

Sequence ID 2L_DroMel_CAF1
Location 212,648 – 212,749
Length 101
Max. P 0.616941
window70

overview

Window 0

Location 212,648 – 212,749
Length 101
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 79.81
Mean single sequence MFE -32.99
Consensus MFE -18.28
Energy contribution -19.06
Covariance contribution 0.78
Combinations/Pair 1.13
Mean z-score -1.91
Structure conservation index 0.55
SVM decision value 0.17
SVM RNA-class probability 0.616941
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 212648 101 - 22407834
AUCGGGGUCCUCUUCCAGUUCAGCAGCUGCUGCGGGACUGGCAGCUAAUCUGCCCAGUCAAACUACAAUAACCAUAGCUCCUCCCAUUAGCAGUGGAGCCA
...((((((((.(..((((......))))..).))))))(((((.....))))).................))...(((((.............))))).. ( -28.42)
>DroPse_CAF1 6250 98 - 1
AGGAUCCUCCUCAUCGAACGCGGCAGCUGCU---GGCCUGGCGGCCAAUCUGCCGUCGCAGACUACCAUCACCAUAGCGCCGCCCAUCAGCAGUGGAGCCA
(((.....)))..........(((.((((((---((...((((((...(((((....)))))(((.........))).))))))..))))))))...))). ( -36.60)
>DroSim_CAF1 4925 101 - 1
AUCAGGCUCCUCUUCCAGUUCAGCAGCUGCUGCGGGACUGGCAGCUAAUCUGCCCAGUCAAACUACAAUAACCAUAGCUCCUCCCAUUAGCAGUGGAGCCA
....((((((.......(.....).(((((((.(((((((((((.....))).))))))...(((.........)))......))..))))))))))))). ( -33.00)
>DroWil_CAF1 6503 98 - 1
UGGCGGCAAUUCUUCCUCCUCGGCAGCUGCU---GGCAUAGCCGCCAAUCUGCCAUCGCAGACCACCAUCACAAUUGCUCCGCCCAUUAGCAGUGGAGCCA
(((((((.......((.....))..((....---.))...))))))).(((((....)))))..............(((((((.........))))))).. ( -32.70)
>DroYak_CAF1 6985 101 - 1
GUCAGGCUCUUCUUCCAGUUCAGCAGCUGCUGCGGGACUGGCAGCUAAUCUGCCCAGUCAAACUACAAUAACCAUAGCUCCUCCCAUUAGCAGUGGAGCCA
....(((((.......((((((((....))))...(((((((((.....))).)))))).))))........(((.(((.........))).)))))))). ( -30.60)
>DroPer_CAF1 6379 98 - 1
AGGAUCCUCCUCAUCGAACGCGGCAGCUGCU---GGCCUGGCGGCCAAUCUGCCGUCGCAGACUACCAUCACCAUAGCGCCGCCCAUCAGCAGUGGAGCCA
(((.....)))..........(((.((((((---((...((((((...(((((....)))))(((.........))).))))))..))))))))...))). ( -36.60)
>consensus
AGCAGGCUCCUCUUCCAGCUCAGCAGCUGCU___GGACUGGCAGCCAAUCUGCCCACGCAAACUACAAUAACCAUAGCUCCGCCCAUUAGCAGUGGAGCCA
....((((((...............((((((...(((..(((((.....)))))........(((.........)))....)))....)))))))))))). (-18.28 = -19.06 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:11 2006