Locus 5

Sequence ID 2L_DroMel_CAF1
Location 23,960 – 24,055
Length 95
Max. P 0.531827
window9

overview

Window 9

Location 23,960 – 24,055
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 82.60
Mean single sequence MFE -25.67
Consensus MFE -18.72
Energy contribution -18.31
Covariance contribution -0.41
Combinations/Pair 1.37
Mean z-score -1.41
Structure conservation index 0.73
SVM decision value -0.00
SVM RNA-class probability 0.531827
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 23960 95 + 22407834
UAACUAGUAAAUUUACAAUGUUUGAGGAUAGCUCCGAAGACAAAAAAUCACGAAGUCUCCAUUGGGUGGACCUUGAGACAAGAACUACACGACUU
....((((..........(((((..(((....)))..)))))............(((((....(((....))).)))))....))))........ ( -18.20)
>DroPse_CAF1 2000 95 + 1
UAACGAGUAAAUUCACAAUAUUUGAGGACAGCUCCGAAGACAGAAAGUCACGGAGCUUCCACUGCGUUGACCGUGAGACGAGCACCACGCGGCUC
...((((((.........)))))).(((.(((((((..(((.....))).)))))))))).((((((((..((.....))..))..))))))... ( -29.70)
>DroEre_CAF1 2095 95 + 1
UAACUAGUAAAUUAACUAUGUUUGAGGAUAGCUCCGAAGACAAGAAAUCACGGAGUUUCCAUUGGGUGGACCUUGAGACAAGAACUACACGACUU
.(((((((......)))).)))...(((.(((((((..((.......)).)))))))))).(((.((((..((((...))))..)))).)))... ( -20.30)
>DroYak_CAF1 2059 95 + 1
UAACUAGCAAAUUUACUAUGUUUGAGGAUAGCUCCGAGGACAAGAAAUCCCGGAGUUUCCAUUGUGUGGACCUUGAGACAAGAACUACACGACUU
.......(((((.......))))).(((.(((((((.(((.......))))))))))))).((((((((..((((...))))..))))))))... ( -29.70)
>DroAna_CAF1 2107 95 + 1
UGACCAGCAAGUUCACGAUAUUUGACGAGAGCUCUGAGGCCAGAAAGUCUCGCAGUUUCCACUGGGUGGACCUUGAAACGAGCACCACUCGGCUC
......((.(((((.((........)).)))))..(((((......)))))))........((((((((..((((...))))..))))))))... ( -26.40)
>DroPer_CAF1 2029 95 + 1
UAACGAGUAAAUUCACAAUAUUUGAGGACAGCUCCGAAGACAGAAAGUCACGGAGCUUCCACUGCGUUGACCGUGAGACGAGCACCACGCGGCUC
...((((((.........)))))).(((.(((((((..(((.....))).)))))))))).((((((((..((.....))..))..))))))... ( -29.70)
>consensus
UAACUAGUAAAUUCACAAUAUUUGAGGAUAGCUCCGAAGACAAAAAAUCACGGAGUUUCCACUGGGUGGACCUUGAGACAAGAACCACACGACUC
.......(((((.......))))).(((.(((((((..............)))))))))).((((((((..((((...))))..))))))))... (-18.72 = -18.31 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:04 2006