Locus 4998

Sequence ID 2L_DroMel_CAF1
Location 14,378,517 – 14,378,625
Length 108
Max. P 0.518450
window7939

overview

Window 9

Location 14,378,517 – 14,378,625
Length 108
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.75
Mean single sequence MFE -23.04
Consensus MFE -16.56
Energy contribution -15.96
Covariance contribution -0.60
Combinations/Pair 1.16
Mean z-score -1.80
Structure conservation index 0.72
SVM decision value -0.03
SVM RNA-class probability 0.518450
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14378517 108 + 22407834
CAAUCAAUUAAUUAGAGCAAAUCAAUUGCUUUGACCGUGUGCUAAUCACAUGCAUUUUUAAUUUGUAAUCGAUUAAAUUACCUGGCAAACUGGAAACU------------CAGUACUACA
...........(((((((((.....)))))))))..(((((((.......(((.....(((((((........)))))))....)))....(....).------------.))))).)). ( -20.10)
>DroSec_CAF1 26539 120 + 1
CAAUCAAUUAAUUAGAGCAAAUCAAUUGCUUUGACCAUGUGCUAAUCACAUGCAUUUUUAAUUUGUAAUCGAUUAAAUUACCUGGUAAACUGGAAACUCAAUUGGUCUCUCAGUACUACA
.((((.((((.(((((((((.....))))))))).((((((.....)))))).............)))).))))........((((..((((((.(((.....))).)).)))))))).. ( -22.80)
>DroSim_CAF1 28641 120 + 1
CAAUCAAUUAAUUAGAGCAAAUCAAUUGCUUUGACCAUGUGCUAAUCACAUGCAUUUUUAAUUUGUAAUCGAUUAAAUUACCUGGUAAACUGGAAACUCAAUUGGUCUCUCAGUACUACA
.((((.((((.(((((((((.....))))))))).((((((.....)))))).............)))).))))........((((..((((((.(((.....))).)).)))))))).. ( -22.80)
>DroEre_CAF1 27231 120 + 1
CAAUCAAUUAAUUAGAGCAAAUCAAUUGCACUGGCCGUGUGCUAAUCACAUGCAUUUUUCAUUUGUAAUCGAUUAAAUUACCUGGCCAACUGGAAACUCAAUUGGGCUCCCAUUACUACA
........((((..((((...(((((((...((((((.(((.(((((...((((.........))))...)))))...))).))))))...(....).)))))))))))..))))..... ( -26.50)
>DroYak_CAF1 28159 120 + 1
CAAUCAAUUAAUUAGAGCAAAUCAAUUGCUUUGGUUGUGUGCUAAUCACAUGCAUUUUUAAUUUGUAAUCGAUUAAAAUACCUGGCAAACUGGAAACUCAAUUGGGCUCUCAUUACUACU
........((((.(((((...(((((((.((..((((((((.....)))))((..((((((((.......))))))))......)).)))..))....)))))))))))).))))..... ( -23.00)
>consensus
CAAUCAAUUAAUUAGAGCAAAUCAAUUGCUUUGACCGUGUGCUAAUCACAUGCAUUUUUAAUUUGUAAUCGAUUAAAUUACCUGGCAAACUGGAAACUCAAUUGGGCUCUCAGUACUACA
.((((.((((.(((((((((.....))))))))).((((((.....)))))).............)))).)))).......(..(....)..)........................... (-16.56 = -15.96 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:10 2006