Locus 4995

Sequence ID 2L_DroMel_CAF1
Location 14,375,852 – 14,375,971
Length 119
Max. P 0.536123
window7935

overview

Window 5

Location 14,375,852 – 14,375,971
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.01
Mean single sequence MFE -23.88
Consensus MFE -16.35
Energy contribution -18.04
Covariance contribution 1.69
Combinations/Pair 1.11
Mean z-score -1.59
Structure conservation index 0.68
SVM decision value 0.01
SVM RNA-class probability 0.536123
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14375852 119 - 22407834
UUCUUGCUGACAGAUUUAUGUUUAUUUGCAAGAGAAUAGUUGUUUGUUGAUAUUUUUUGUGUUCACAUA-ACAACUGGUUGGCAUACGCACAAAAUGUACUUAAAUCUCAAAUUACAACA
(((((((.((((......)))).....)))))))....(((((...(((((((.((((((((.....((-((.....))))......)))))))).)))........))))...))))). ( -26.30)
>DroSec_CAF1 24009 119 - 1
UUCUUGCUGACAGAUUUAUGUUUAUUUGCAAAAGAAUAGUUGUUCGUUGAUAUUUUUUGUGCUCACAUA-ACAACUGGUUGGCAUACGCACAAAAUGUACUUAAAUCUCAAAUUACAACA
(((((..((.(((((........))))))).)))))..(((((...(((((((.((((((((.....((-((.....))))......)))))))).)))........))))...))))). ( -24.40)
>DroSim_CAF1 26111 119 - 1
UUCUUGCUGACAGAUUUAUGUUUAUUUGCAAAAGAAUAGUUGUUCGUUGAUAUUUUUUGUGCUCACAUA-ACAACUGGUUGGCAUACGCACAAAAUGUACUUAAAUCUCAAAUUACAACA
(((((..((.(((((........))))))).)))))..(((((...(((((((.((((((((.....((-((.....))))......)))))))).)))........))))...))))). ( -24.40)
>DroYak_CAF1 25619 102 - 1
UUCUUGCUGACAGAUUUAUGUUCAUUUGCAAAGGAAUAGUUGUUUGUUGAUAUUUUUUGUGUUCAUAUAAACAACUGGUUGUCAUACGCACAA------------------AUUGCAUCA
.......((((((.....(((......)))......(((((((((((.(((((.....)))))...))))))))))).))))))...(((...------------------..))).... ( -20.40)
>consensus
UUCUUGCUGACAGAUUUAUGUUUAUUUGCAAAAGAAUAGUUGUUCGUUGAUAUUUUUUGUGCUCACAUA_ACAACUGGUUGGCAUACGCACAAAAUGUACUUAAAUCUCAAAUUACAACA
(((((..((.(((((........))))))).)))))..(((((...(((((((.((((((((.........(((....)))......)))))))).)))........))))...))))). (-16.35 = -18.04 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:06 2006