Locus 4992

Sequence ID 2L_DroMel_CAF1
Location 14,375,054 – 14,375,169
Length 115
Max. P 0.999307
window7930

overview

Window 0

Location 14,375,054 – 14,375,169
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.50
Mean single sequence MFE -32.16
Consensus MFE -28.40
Energy contribution -29.40
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.46
Structure conservation index 0.88
SVM decision value 3.50
SVM RNA-class probability 0.999307
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14375054 115 + 22407834
UGCUUAUCUGC----UCAGAGAGCGAAA-UAAAAAAUCUUGAAAACAAGUUAAAUGCAUGCAUAAAUCAAUCAAUCGCAGCAUUUGACAGACAGUCUCGAGUGGCGAGGCAAUCGAGGGU
.((((.(((..----..)))))))....-.......((((((......(((((((((.(((...............)))))))))))).....((((((.....))))))..)))))).. ( -32.36)
>DroSec_CAF1 23197 115 + 1
UGCUUAUCUGC----UCUGAGAGCGAAA-UAAAAAAUCUCGAAAACAAGUUAAAUGCAUGCAUAAAUCAAUCAAUCGCAGCAUUUGACAGACAGUCUCGAGUGGCGAGGCGGUCGAGGGU
.((((.((...----...))))))....-.......((((........(((((((((.(((...............)))))))))))).(((.((((((.....)))))).))))))).. ( -34.16)
>DroSim_CAF1 25299 115 + 1
UGCUUAUCUGC----UCUGAGAGCGAAA-UAAAAAAUCUCGAAAACAAGUUAAAUGCAUGCAUAAAUCAAUCAAUCGCAGCAUUUGACAGACAGUCUCGAGUGGCGAGGCGGUCGAGGGU
.((((.((...----...))))))....-.......((((........(((((((((.(((...............)))))))))))).(((.((((((.....)))))).))))))).. ( -34.16)
>DroEre_CAF1 23965 116 + 1
UGCUUAUCUGU----UCAGAGAGCGAAAUGAAAAAAUCAGAAAAACAAGUUAAAUGCAUGCAUAAAUCAAUCAAUCGCAGCAUUUGACAGACAGUCUCGAGUGGCGAGGCAUUCGAGGGU
.((((.(((..----..)))))))........................(((((((((.(((...............))))))))))))......(((((((((......))))))))).. ( -29.96)
>DroYak_CAF1 24772 119 + 1
UGCUUAUCUGUCUGCUCAGAGAGCGAAA-AAAAAAAUCAGAAAAACAAGUUAAAUGCAUGCAUAAAUCAAUCAAUCCCAGCAUUUGACAGACAGUCUCGAGUGGCGAGGCAGUCGAGGGU
.......((((((((((...))))....-...................(((((((((......................)))))))))))))))((((((.((......)).)))))).. ( -30.15)
>consensus
UGCUUAUCUGC____UCAGAGAGCGAAA_UAAAAAAUCUCGAAAACAAGUUAAAUGCAUGCAUAAAUCAAUCAAUCGCAGCAUUUGACAGACAGUCUCGAGUGGCGAGGCAGUCGAGGGU
.((((.((((......))))))))............((..........(((((((((.(((...............)))))))))))).(((.((((((.....)))))).))))).... (-28.40 = -29.40 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:01 2006