Locus 4989

Sequence ID 2L_DroMel_CAF1
Location 14,372,763 – 14,372,883
Length 120
Max. P 0.512060
window7925

overview

Window 5

Location 14,372,763 – 14,372,883
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.06
Mean single sequence MFE -20.76
Consensus MFE -16.18
Energy contribution -16.02
Covariance contribution -0.16
Combinations/Pair 1.07
Mean z-score -1.66
Structure conservation index 0.78
SVM decision value -0.04
SVM RNA-class probability 0.512060
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14372763 120 - 22407834
UUUCAUAUUAAUACAUUUCAAUUUGUCCACUAAGCAACUUUGACAAAAAGGCCGCCGCGCAAAUGUGUUUUGUUUAGCCAUAAAUUAUCACCAAAAUGCUUAAACUUAAACGCUGAAAUA
..............((((((((((((...........((((.....))))((....))))))))((((((.((((((.(((..............))).))))))..)))))))))))). ( -17.64)
>DroSec_CAF1 20921 119 - 1
UUUCAUAUUAAUACAUUUCAAUUUGUCCG-AAAGCAACUUUGACAAAAAUGCCGACGCACAAAUGUGUUUUGUUUAGCCAUAAAUUAUCACCAAAAUGCUUAAACUUAAACGCUGAAAUG
.............(((((((((((((.((-...(((..(((....))).)))...)).))))))((((((.((((((.(((..............))).))))))..))))))))))))) ( -20.94)
>DroSim_CAF1 23018 119 - 1
UUUCAUAUUAAUACAUUUCAAUUUGUCCG-AAAGCAACUUUGACAAAAAUGCCGCCGCACAAAUGUGUUUUGUUUAGCCAUAAAUUAUCACCAAAAUGCUUAAACUUAAACGCUGAAAUG
.............(((((((((((((.((-...(((..(((....))).)))...)).))))))((((((.((((((.(((..............))).))))))..))))))))))))) ( -20.94)
>DroEre_CAF1 21720 119 - 1
UUUCAUAUUAAUACAUUUCAAUUUGUCCG-AAAACAACUUCGACAAAAAGGCCGCCGCCCAAAUGGGUUUUGUUUAGCCAUAAAUUAUCACCAAAAUGCUUAAACUUAAACGCUGAAGUA
..............(((((..((((((.(-((......)))))))))..(((....((((....))))...((((((.(((..............))).))))))......)))))))). ( -19.54)
>DroYak_CAF1 22431 119 - 1
UUUCAUAUUAAUACAUUUCAAUUUGUCCG-AAAACAACUUGGACAAAAAGGCCGCCGCCCAAAUGUGUUUUGUUUAGCCAUAAAUUAUCACCAAAAUGCUUAAACUUAAACGCUGAAGUA
..............((((((.((((((((-(.......)))))))))..(((....))).....((((((.((((((.(((..............))).))))))..)))))))))))). ( -24.74)
>consensus
UUUCAUAUUAAUACAUUUCAAUUUGUCCG_AAAGCAACUUUGACAAAAAGGCCGCCGCACAAAUGUGUUUUGUUUAGCCAUAAAUUAUCACCAAAAUGCUUAAACUUAAACGCUGAAAUA
..............((((((.((((((..............))))))..(((....))).....((((((.((((((.(((..............))).))))))..)))))))))))). (-16.18 = -16.02 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:56 2006