Locus 4986

Sequence ID 2L_DroMel_CAF1
Location 14,371,781 – 14,371,887
Length 106
Max. P 0.977372
window7922

overview

Window 2

Location 14,371,781 – 14,371,887
Length 106
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.52
Mean single sequence MFE -29.98
Consensus MFE -22.22
Energy contribution -23.38
Covariance contribution 1.16
Combinations/Pair 1.04
Mean z-score -2.80
Structure conservation index 0.74
SVM decision value 1.79
SVM RNA-class probability 0.977372
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14371781 106 - 22407834
GCCAGCGGCGUUUUGAGCCAAUGAUUAAAAAGGCCAACACGCA----CGCC------ACAAACUAGAUCCGACUGCGAUUGCAUUCGUAACUUGGCUAUCUCUAUCUCCACUAUCU----
(((((((((((.(((.(((............)))))).)))).----))).------............(((.(((....))).))).....))))....................---- ( -27.50)
>DroSec_CAF1 19968 104 - 1
--CAACGGCGUUUUGAGCCAAUGAUUAAAAAGGCCAACACGCA----CGCC------ACAAACUAGAUCCGACUGCGAUUGCAGUCGUAACUUGGCUAUCUCUAUCUCCACUAUCU----
--.....((((.(((.(((............)))))).)))).----.(((------(......((...(((((((....)))))))...))))))....................---- ( -27.10)
>DroSim_CAF1 22056 104 - 1
--CAACGGCGUUUUGAGCCAAUGAUUAAAAAGGCCAACACGCA----CGCC------ACAAACUAGAUCCGACUGCGAUUGCAGUCGUAACUUGGCUAUCUCUAUCUCCACUAUCU----
--.....((((.(((.(((............)))))).)))).----.(((------(......((...(((((((....)))))))...))))))....................---- ( -27.10)
>DroEre_CAF1 20756 105 - 1
GCCAGCGGCGUUUUGAGCCAAUGAUUAAAAAGGCCAAAACGCACGCACGCCACAGCAACAAACUAGAUCCGACUGCGAUUCCAAUCGCAACUUGGCUAUCUCUAU---------------
(((((((((((((((.(((............))))))))))).)))..((....)).................((((((....))))))...)))).........--------------- ( -33.80)
>DroYak_CAF1 21448 109 - 1
GCCAGCGGCGUUUUGAGCCAAUGAUUAAAAAGGCCAACACGCA----CGCC------ACAAACUAGAUCCGACUGCGAACGCAGUCGUAACUUGGCUAUCUCUAUCUC-UCUAUCUCCUC
(((((((((((.(((.(((............)))))).)))).----))).------............(((((((....))))))).....))))............-........... ( -34.40)
>consensus
GCCAGCGGCGUUUUGAGCCAAUGAUUAAAAAGGCCAACACGCA____CGCC______ACAAACUAGAUCCGACUGCGAUUGCAGUCGUAACUUGGCUAUCUCUAUCUCCACUAUCU____
(((((.(((((.(((.(((............)))))).))))...........................(((((((....)))))))...))))))........................ (-22.22 = -23.38 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:53 2006