Locus 4985

Sequence ID 2L_DroMel_CAF1
Location 14,370,502 – 14,370,622
Length 120
Max. P 0.996079
window7921

overview

Window 1

Location 14,370,502 – 14,370,622
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 99.67
Mean single sequence MFE -31.64
Consensus MFE -30.76
Energy contribution -30.76
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.21
Structure conservation index 0.97
SVM decision value 2.65
SVM RNA-class probability 0.996079
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14370502 120 + 22407834
CAAUUUAUCACGCAAAUGCGUUUUUCAAUUUUAACAUGCCGCCAGGCAUCAUAAAAACGUUACAAACCCACAAUAUGAGCCAAGAGCCACGAGCAGUAGAAAAGCGGCAUGGGGGUAAGC
...((((((((((....)))).............((((((((..(((.(((((.....((.....))......))))))))....((.....)).........))))))))..)))))). ( -30.80)
>DroSec_CAF1 18688 120 + 1
CAAUUUAUCACGCAAAUGCGUUUUUCAAUUUUAACAUGCCGCCAGGCAUCAUAAAAACGUUACAAACCCACAAUAUGAGCCAAGAGCCACGAGCAGUAGAAAAGCGGCAUGGGGGUAAGC
...((((((((((....)))).............((((((((..(((.(((((.....((.....))......))))))))....((.....)).........))))))))..)))))). ( -30.80)
>DroSim_CAF1 20787 120 + 1
CAAUUUAUCACGCAAAUGCGUUUUUCAAUUUUAACAUGCCGCCAGGCAUCAUAAAAACGUUACAAACCCACAAUAUGAGCCAAGAGCCACGAGCAGUAGAAAAGCGGCAUGGGGGUAAGC
...((((((((((....)))).............((((((((..(((.(((((.....((.....))......))))))))....((.....)).........))))))))..)))))). ( -30.80)
>DroEre_CAF1 19672 120 + 1
CAAUUUAUCACGCAAAUGCGUUUUUCAAUUUUAACAUGCCGCCAGGCAUCAUAAAAACGUUACAAACCCACAAUAUGAGCCAAGAGCCACGAGCAGUAGAAAAGCGGCAUGGGGGUAAGC
...((((((((((....)))).............((((((((..(((.(((((.....((.....))......))))))))....((.....)).........))))))))..)))))). ( -30.80)
>DroYak_CAF1 20129 120 + 1
CAAUUUAUCACGCAAAUGCGUUUUUCAAUUUUAACAUGCCGCCAGGCAUCAUAAAAACGUUACAAACCCACAAUAUGAGCCAAGAGCCACGAGCAGUAGAAAGGCGGCAUGGGGGUAAGC
...((((((((((....)))).............(((((((((.(((.(((((.....((.....))......))))))))....((.....))........)))))))))..)))))). ( -35.00)
>consensus
CAAUUUAUCACGCAAAUGCGUUUUUCAAUUUUAACAUGCCGCCAGGCAUCAUAAAAACGUUACAAACCCACAAUAUGAGCCAAGAGCCACGAGCAGUAGAAAAGCGGCAUGGGGGUAAGC
...((((((((((....)))).............((((((((..(((.(((((.....((.....))......))))))))....((.....)).........))))))))..)))))). (-30.76 = -30.76 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:52 2006