Locus 4982

Sequence ID 2L_DroMel_CAF1
Location 14,367,172 – 14,367,292
Length 120
Max. P 0.922012
window7905 window7906

overview

Window 5

Location 14,367,172 – 14,367,292
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.20
Mean single sequence MFE -34.78
Consensus MFE -32.46
Energy contribution -32.90
Covariance contribution 0.44
Combinations/Pair 1.09
Mean z-score -1.66
Structure conservation index 0.93
SVM decision value 1.14
SVM RNA-class probability 0.922012
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14367172 120 + 22407834
UUGAUAUCUUCUUGGCUCUGUGGCGCGCUUUUGGUAAUUGCACUUCGUCCGCUGCUUCUGUGUUACCAGCCUUGUGAGCCACAGUCAUGGCUAAGAAAAUAGGCCCACUGAUGUGUAUGC
....(((.((((((((((((((((.(((..((((((((.((((.......).)))......))))))))....))).)))))))....))))))))).)))....(((....)))..... ( -37.10)
>DroSec_CAF1 15142 120 + 1
UUGAUAUCUUCUUGGCUCUGUGGCGCGCUUUUGGUAAUUGCACUUCGUCCGCUGCUUCUGUGUUACCAGCCUCGUGAGCCACAGUCAUGGCUAAGAAAAUAGGCCCUGAAUAGUUUAUAC
........((((((((((((((((.(((..((((((((.((((.......).)))......))))))))....))).)))))))....))))))))).((((((........)))))).. ( -35.80)
>DroSim_CAF1 17253 120 + 1
UUGAUAUCUUCUUGGCUCUGUGGCGCGCUUUUGGUAAUUGCACUUCGUCCGCUGCUUCUGUGUUACCAGCCUCGUGAGCCACAGUCAGGGCCAAGAAAAUGGGCCCUGAAUAGUUUAUAC
.............(((((((((((.(((..((((((((.((((.......).)))......))))))))....))).)))))))((((((((.........))))))))..))))..... ( -38.90)
>DroEre_CAF1 16157 115 + 1
UUGAUAUCUUCUUGGCUCUGUGGCGCGCUUUUGGUAAUUGCACUUCAUCCGCUGCUUCUGUGUUACCAGCAUUGUGAGCCACAGUCAUGGCCAAGCAUAUAAUAUCAAAA-AAUCU----
(((((((...((((((((((((((.(((..((((((((.((((.......).)))......))))))))....))).)))))))....)))))))......)))))))..-.....---- ( -37.80)
>DroYak_CAF1 15371 115 + 1
UUGAUAUCUUCUUGGCUCUGUGGCGCGCUUUUGGUAAUUGCACUUCGUCCGCUGCUUCUGUGUUACCAGCCUUGUGAAGUACACUCAUGGCCAAGCAAAUAAAAUCAAAA-AAUCU----
(((((.....(((((((..(((.((((...((((((((.((((.......).)))......))))))))...)))).....)))....)))))))........)))))..-.....---- ( -24.32)
>consensus
UUGAUAUCUUCUUGGCUCUGUGGCGCGCUUUUGGUAAUUGCACUUCGUCCGCUGCUUCUGUGUUACCAGCCUUGUGAGCCACAGUCAUGGCCAAGAAAAUAGGCCCAAAA_AGUCUAU_C
....(((.((((((((((((((((.(((..((((((((.((((.......).)))......))))))))....))).)))))))....))))))))).)))................... (-32.46 = -32.90 +   0.44)

alignment

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secondary structure

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dotplot

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Window 6

Location 14,367,172 – 14,367,292
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.20
Mean single sequence MFE -33.62
Consensus MFE -28.46
Energy contribution -30.10
Covariance contribution 1.64
Combinations/Pair 1.04
Mean z-score -1.80
Structure conservation index 0.85
SVM decision value 0.98
SVM RNA-class probability 0.893698
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14367172 120 - 22407834
GCAUACACAUCAGUGGGCCUAUUUUCUUAGCCAUGACUGUGGCUCACAAGGCUGGUAACACAGAAGCAGCGGACGAAGUGCAAUUACCAAAAGCGCGCCACAGAGCCAAGAAGAUAUCAA
((...(((....))).)).(((((((((.((.....(((((((.......((((.(........).)))).......((((...........))))))))))).)).))))))))).... ( -34.40)
>DroSec_CAF1 15142 120 - 1
GUAUAAACUAUUCAGGGCCUAUUUUCUUAGCCAUGACUGUGGCUCACGAGGCUGGUAACACAGAAGCAGCGGACGAAGUGCAAUUACCAAAAGCGCGCCACAGAGCCAAGAAGAUAUCAA
...................(((((((((.((.....(((((((((.((..(((.(.....)...)))..))))....((((...........))))))))))).)).))))))))).... ( -31.00)
>DroSim_CAF1 17253 120 - 1
GUAUAAACUAUUCAGGGCCCAUUUUCUUGGCCCUGACUGUGGCUCACGAGGCUGGUAACACAGAAGCAGCGGACGAAGUGCAAUUACCAAAAGCGCGCCACAGAGCCAAGAAGAUAUCAA
...........((((((((.........))))))))(((((((((.((..(((.(.....)...)))..))))....((((...........)))))))))))................. ( -38.00)
>DroEre_CAF1 16157 115 - 1
----AGAUU-UUUUGAUAUUAUAUGCUUGGCCAUGACUGUGGCUCACAAUGCUGGUAACACAGAAGCAGCGGAUGAAGUGCAAUUACCAAAAGCGCGCCACAGAGCCAAGAAGAUAUCAA
----.....-..((((((((.....((((((.....((((((((((...(((((.(........).)))))..))).((((...........))))))))))).))))))..)))))))) ( -37.80)
>DroYak_CAF1 15371 115 - 1
----AGAUU-UUUUGAUUUUAUUUGCUUGGCCAUGAGUGUACUUCACAAGGCUGGUAACACAGAAGCAGCGGACGAAGUGCAAUUACCAAAAGCGCGCCACAGAGCCAAGAAGAUAUCAA
----.....-..((((...(((((.((((((..((.(((.....)))...((((.(........).))))((.....((((...........)))).)).))..)))))).))))))))) ( -26.90)
>consensus
G_AUAAACU_UUCUGGGCCUAUUUUCUUGGCCAUGACUGUGGCUCACAAGGCUGGUAACACAGAAGCAGCGGACGAAGUGCAAUUACCAAAAGCGCGCCACAGAGCCAAGAAGAUAUCAA
...................((((((((((((.....(((((((.......((((.(........).)))).......((((...........))))))))))).)))))))))))).... (-28.46 = -30.10 +   1.64)

alignment

Postscript

secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:38 2006