Locus 498

Sequence ID 2L_DroMel_CAF1
Location 1,489,851 – 1,489,947
Length 96
Max. P 0.647939
window794

overview

Window 4

Location 1,489,851 – 1,489,947
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 91.35
Mean single sequence MFE -26.89
Consensus MFE -19.08
Energy contribution -21.68
Covariance contribution 2.60
Combinations/Pair 1.10
Mean z-score -2.27
Structure conservation index 0.71
SVM decision value 0.24
SVM RNA-class probability 0.647939
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1489851 96 + 22407834
GAGGUGGGGCUUUGGCGGUGAGCAAAUCACCAGCCAAGUCUUUAACCCAGCUUCAUUUAAUAUGUUGACAAGUUAAUAAAUUGUUUUGCAUGAACA
((((((((..(((((((((((.....))))).)))))).......)))).))))......(((((.(((((.........)))))..))))).... ( -29.60)
>DroSec_CAF1 107600 96 + 1
GGAGUGGGGCUUUGGCGGUGAGCAAAUCACCAGCCAAGUCUUUAACCCAGCUUCAUUUAAUAUGUUGACAAGUUGAUAAAUUGUUUUGCAUGAACA
((((((((..(((((((((((.....))))).)))))).......)))).))))......(((((.(((((.........)))))..))))).... ( -29.40)
>DroSim_CAF1 110122 96 + 1
GGAGUGGGGCUUUGGCGGUGAGCAAAUCACCAGCCAAGUCUUUAACCCAGCUUCAUUUAAUAUGUUGACAAGUUGAUAAAUUGUUUUGCAUGAACA
((((((((..(((((((((((.....))))).)))))).......)))).))))......(((((.(((((.........)))))..))))).... ( -29.40)
>DroEre_CAF1 113434 95 + 1
GG-GUGGGGCUUCGGCGGUGAGCAAAUCACCAGCCAAGUCUUUAACCCAGCUUCAUUUAAUAUGUUGACAAGUUGAUAAAUUGUUUUGCAUAAACA
((-((.((((((.((((((((.....))))).)))))))))...))))............(((((.(((((.........)))))..))))).... ( -31.80)
>DroYak_CAF1 110649 81 + 1
GG-GUGG--------------GCAAAUCACCAGGCAAGUCUUUAACCCAGCUUCAUUUAAUAUGUUGACAAGUUGAUAAAUUGUUUUGCAUGAACA
.(-((((--------------.....)))))..(((((.........((((((((..........)))..))))).........)))))....... ( -14.27)
>consensus
GG_GUGGGGCUUUGGCGGUGAGCAAAUCACCAGCCAAGUCUUUAACCCAGCUUCAUUUAAUAUGUUGACAAGUUGAUAAAUUGUUUUGCAUGAACA
((((((((..(((((((((((.....))))).)))))).......)))).))))......(((((.(((((.........)))))..))))).... (-19.08 = -21.68 +   2.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:34 2006