Locus 4977

Sequence ID 2L_DroMel_CAF1
Location 14,349,138 – 14,349,231
Length 93
Max. P 0.701386
window7892

overview

Window 2

Location 14,349,138 – 14,349,231
Length 93
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 80.01
Mean single sequence MFE -22.12
Consensus MFE -11.69
Energy contribution -11.55
Covariance contribution -0.14
Combinations/Pair 1.38
Mean z-score -2.19
Structure conservation index 0.53
SVM decision value 0.35
SVM RNA-class probability 0.701386
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14349138 93 - 22407834
--UGCUUGUGAUAGAUGUUUUCAUGAUUUGUUCAAAAUCCUACAAGUCUUUGUUUAGCGUUAAUGUUCCGAUUAGCUUUGGAGCGUAGUAUUUUU
--((((.......((((((..((.(((((((..........)))))))..))...)))))).(((((((((......)))))))))))))..... ( -21.50)
>DroPse_CAF1 15550 92 - 1
AGUAUUUGUGAUAGAU-AUUUCAUGAUUUGUUUGGAAAUCUAUAAUG--GAGUUCACCGUUAAUGUUCCAAAUCAAUUUGGAACCAAGUAUUUUU
((((((((...(((((-.(((((.........))))))))))(((((--(......))))))..((((((((....))))))))))))))))... ( -21.50)
>DroSec_CAF1 14594 93 - 1
--UGCUUGUGAUAGAGGUUUUCAUGAUUUGUCCAAAAUCCUACAAGUCUUUGUUUAGCGUUAAUGUUCCGAUUAGCUUUGGAGCGUAGUAUUUUU
--.(((...(((((((..((....(((((.....)))))....))..))))))).)))....(((((((((......)))))))))......... ( -23.80)
>DroSim_CAF1 14596 93 - 1
--UGCUUGUGAUAGAGGUUUUCAUGAUUUGUCCAAAAUCCUACAAGUCUUUGUUUAGCGUUAAUGUUCCGAUUAGCUUUGGAGCGUAGUAUUUUU
--.(((...(((((((..((....(((((.....)))))....))..))))))).)))....(((((((((......)))))))))......... ( -23.80)
>DroYak_CAF1 16300 94 - 1
AGUGCUUGUGAUAGA-GUUUUCAUGAUUUGUCCAAAAUCCAGCAGGUCUAUGUCUAGCGUUAUUGCUCCUAUUAGAUUUGGAGCGUAGUAUUUUU
((((((...(((((.-(((..((((((((((..........))))))).)))...))).)))))(((((..........)))))..))))))... ( -20.60)
>DroPer_CAF1 17712 92 - 1
AGUAUUUGUGAUAGAU-AUUUCAUGAUUUGUUUGGAAAUCUAUAAUG--GAGUUCACCGUUAAUGUUCCAAAUCAAUUUGGAACCAAGUAUUUUU
((((((((...(((((-.(((((.........))))))))))(((((--(......))))))..((((((((....))))))))))))))))... ( -21.50)
>consensus
__UGCUUGUGAUAGAUGUUUUCAUGAUUUGUCCAAAAUCCUACAAGUCUUUGUUUAGCGUUAAUGUUCCGAUUAGAUUUGGAGCGUAGUAUUUUU
...(((((((...((.....))..(((((.....))))).))))))).................(((((((......)))))))........... (-11.69 = -11.55 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:24 2006