Locus 4974

Sequence ID 2L_DroMel_CAF1
Location 14,330,532 – 14,330,632
Length 100
Max. P 0.981648
window7889

overview

Window 9

Location 14,330,532 – 14,330,632
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 87.30
Mean single sequence MFE -24.32
Consensus MFE -18.30
Energy contribution -19.30
Covariance contribution 1.00
Combinations/Pair 1.11
Mean z-score -2.82
Structure conservation index 0.75
SVM decision value 1.89
SVM RNA-class probability 0.981648
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14330532 100 + 22407834
AGAAGAAGGAAAAAGAGAGGAAGGAGCAAGAGGAAUCGAGGACUGCCAGCCGAAAGGUGUCUGUAGCUCAAGAUGGUCUAUUGUCCAGUAGAACCUUUAG
....(((((..............((((.(.(((......((....)).(((....))).))).).)))).......((((((....)))))).))))).. ( -24.20)
>DroSec_CAF1 2050 100 + 1
AGAAGAGGGAAAAGGAAAAGAAGGAGCAAGAGGAAUCGAGGGCUGCCAGCCGAAAGGUAUCGGUAGCUCAAGAUGGUCUAUUGUCCAGUAGAACAGUUAG
......................(((.(((.(((.(((..((((((((.(((....)))...))))))))..)))..))).)))))).............. ( -30.10)
>DroSim_CAF1 2053 100 + 1
AGAAGAGGGAAAAGGAAAAGAAGGAGCAAGAGGAAUCGAGGGCUGCCAGCCGAAAGGUAUCGGUAGCUCAAGAUGGUCUAUUGUCCAGUAGAACAGUUAG
......................(((.(((.(((.(((..((((((((.(((....)))...))))))))..)))..))).)))))).............. ( -30.10)
>DroEre_CAF1 2057 100 + 1
AGAAAAGGGAAAAAGAAAGGAAGGAACAGGAGGAAAUGAGGGCUGCCAGCCGAAAGGUGUCUGUAGCUCAAGAAGGUGUAUUGUCAAGUAGGAUCGCGAG
......(.((.............................(((((((..(((....)))....))))))).......(.((((....)))).).)).)... ( -19.30)
>DroYak_CAF1 2059 100 + 1
AGAAAAGGGAAAAAGAAAGAAAGGAUCAGGAGGAAUCGAAGGCUGCGAGCCGAAAGGUAUCAGUAGCUCAAGAAGGUGUAUUGUCAAGUAGAAUCGCGAG
...................................(((..(((((((((((....))).)).))))))......(((.((((....))))..))).))). ( -17.90)
>consensus
AGAAGAGGGAAAAAGAAAGGAAGGAGCAAGAGGAAUCGAGGGCUGCCAGCCGAAAGGUAUCGGUAGCUCAAGAUGGUCUAUUGUCCAGUAGAACCGUUAG
......................(((.(((.....(((..(((((((..(((....)))....)))))))..)))......)))))).............. (-18.30 = -19.30 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:21 2006