| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,314,877 – 14,314,982 |
| Length | 105 |
| Max. P | 0.560275 |
| Location | 14,314,877 – 14,314,982 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 79.99 |
| Mean single sequence MFE | -22.78 |
| Consensus MFE | -11.94 |
| Energy contribution | -12.47 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.560275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14314877 105 + 22407834 CCAUAAAAUUUAUAUGCUCGCACAUAUUUAAUCCCCAUAUUCAAAUUU------GCUUAUGCGGGCACAAUUUUCCGUGCCAUAAACUUUGGUAUUACCCACAUGUGGA-UU (((((.........((((((((((.(((((((......))).)))).)------)....)))))))).........((((((.......))))))........))))).-.. ( -21.10) >DroPse_CAF1 182007 107 + 1 CCGUAAAAUGCCU---CCUGUACAUACUUAAUCCGCAUAUGCAAAUUCGAUUCUGCCGAUGCGGGCACAAUUUUCCAUCCCAUAAACUUUGGUAUUACCCCCAUGAGG--UU .........((((---(.((...........(((((((..(((..........)))..)))))))..............(((.......))).........)).))))--). ( -20.50) >DroEre_CAF1 149701 106 + 1 CCAUAAAAUUUAUAUGCUCGCACAUAUUUAAUCCCCAUAUGCAAAUUG------GCUUAUGGGGGCACAGUUUUCCAUGCCAUAAACUUUGGUAUUACCCGCAUGUGGAAUU ........(((((((((..............((((((((.((......------)).))))))))...........((((((.......)))))).....)))))))))... ( -28.90) >DroYak_CAF1 138965 105 + 1 CCUCUAAAUUUAUAUGCUCGCACAUAUUUAAUCCCCAUAUGCAAGUUU------GCUGAUGGGGGCACAAUUUUCCAUGCCAUAAACUUUGGUAUUACCCACAUGUGGA-UU ......((((((((((...............(((((((..(((....)------))..)))))))...........((((((.......))))))......))))))))-)) ( -24.80) >DroAna_CAF1 151558 93 + 1 CCAUAAAAUUUAU------------GUCUAAUCCGCAUAUGCAAAUUC------GGCUAUGCGGGCACAAUUUUCCAAGCCAUAAACUUUGGUAUUACCCACAUGGGGA-UU .((((.....)))------------).....((((((((.((......------.)))))))))).............((((.......))))....(((....)))..-.. ( -20.90) >DroPer_CAF1 187381 107 + 1 CCGUAAAAUGCCU---CCUGUACAUACUUAAUCCGCAUAUGCAAAUUCGAUUCUGCCGAUGCGGGCCCAAUUUUCCAUCCCAUAAACUUUGGUAUUACCCCCAUGAGG--UU .........((((---(.((...........(((((((..(((..........)))..)))))))..............(((.......))).........)).))))--). ( -20.50) >consensus CCAUAAAAUUUAU___CUCGCACAUAUUUAAUCCCCAUAUGCAAAUUC______GCCGAUGCGGGCACAAUUUUCCAUGCCAUAAACUUUGGUAUUACCCACAUGUGGA_UU ((.............................(((((((..((............))..)))))))...........((((((.......))))))...........)).... (-11.94 = -12.47 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:19 2006