| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,305,867 – 14,305,962 |
| Length | 95 |
| Max. P | 0.759067 |
| Location | 14,305,867 – 14,305,962 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 82.31 |
| Mean single sequence MFE | -15.02 |
| Consensus MFE | -10.46 |
| Energy contribution | -10.99 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.759067 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14305867 95 - 22407834 AUUACCACAUUUUCCAAUUUACGGCGUGAAAAACGAAAUGG------------AAACUCGAUAAACAAUUCAAUUGCAAUUAUGCAAUAAAGAUUGAAAC-ACCAA--GG ....((....((((((.(((.((...(....).))))))))------------))).........(((((..((((((....))))))...)))))....-.....--)) ( -14.70) >DroSim_CAF1 130732 91 - 1 AUUAACACAUUUUCCAAUUUACGGGGUGAAAAACGAAAUGG------------AAACUCGAUAAACAAUUCAAUUGCAAUUAUGCAAUAAAGAUUGAAAC-ACC------ .............((.......))((((.....(((...(.------------...)))).....(((((..((((((....))))))...)))))...)-)))------ ( -15.00) >DroEre_CAF1 139958 87 - 1 AUUAACACAUUUUCCAAUUUACGGGGUGAAAUACGAAAUGG------------AAACUCGAUAAACAAUUCAAUUGCAAUUAUGCAAUAAAGAUUGGAA----------- ...........(((((((((...((((......(((...(.------------...)))).......)))).((((((....))))))..)))))))))----------- ( -16.12) >DroYak_CAF1 129530 87 - 1 AUUAACACAUUUUCCAAUUUACGGGGUGCAACACAAAAUGG------------AAACUCGAUAAACAAUUCAAUUGCAAUUAUGCAAUAAAGAUUGGAA----------- ...........(((((((((...((((....((.....)).------------..)))).............((((((....))))))..)))))))))----------- ( -15.90) >DroAna_CAF1 142799 87 - 1 AUUAACACAUUUUCCAAUUUACAGAGUGAAAAACGAAAUCG------------AAACUCGACAAACAAUUCAAUUACAAUUAUGCAAUAAAGAUUGGAA----------- ...........(((((((((...((((......((....))------------..))))((........))...................)))))))))----------- ( -10.80) >DroPer_CAF1 176662 110 - 1 AUUAACACAAUUUCCAAUCUACUGAAUAUGAAAAGAAAUCGAAAUCAAAAUCCAAACUCUACAAACAAUUCAAUUGCAAUUAUGCAAUAAAGAUUGGAAAAACCGAACCG ..........((((((((((..(((((......(((....((........)).....))).......)))))((((((....))))))..)))))))))).......... ( -17.62) >consensus AUUAACACAUUUUCCAAUUUACGGGGUGAAAAACGAAAUGG____________AAACUCGAUAAACAAUUCAAUUGCAAUUAUGCAAUAAAGAUUGGAA___________ ...........(((((((((...((((............................)))).............((((((....))))))..)))))))))........... (-10.46 = -10.99 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:14 2006