Locus 4966

Sequence ID 2L_DroMel_CAF1
Location 14,267,796 – 14,267,892
Length 96
Max. P 0.634264
window7877

overview

Window 7

Location 14,267,796 – 14,267,892
Length 96
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 79.09
Mean single sequence MFE -24.45
Consensus MFE -15.50
Energy contribution -15.67
Covariance contribution 0.17
Combinations/Pair 1.10
Mean z-score -1.47
Structure conservation index 0.63
SVM decision value 0.21
SVM RNA-class probability 0.634264
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14267796 96 + 22407834
UGGCCAUAAAUUAAUGUUAUAGACCAAGUUUUGAUAAGACAUUGACGCCGUCUGCGAGUCGGCGA------CGUCGACCAAAGCCCGGCAUUAAACUAACAA------
..(((.....((((((((.((...((.....)).)).))))))))(((((.(.....).))))).------...............))).............------ ( -20.00)
>DroPse_CAF1 126541 89 + 1
UGGCUAUAAAUUAAUGUUAUAGACCAAGUUUUGAUAAGGCAUUGACGCCGUCUGCUCGGCGGCGA------CGACAACC---GCCUGA----GCAACAACAA------
(((((((((.......)))))).))).(((.......(((......)))((.((((((((((...------......))---))).))----))))))))..------ ( -28.40)
>DroEre_CAF1 101670 102 + 1
UGGCCAUAAAUUAAUGUUAUAGACCAAGUUUUGAUAAGACAUUGACGCCGUCUGCGAGUCGGCGA------CGUCGACCAAAGCCCGGCAUUAAACUAACAACCACAA
(((.......((((((((.((...((.....)).)).)))))))).((((...((..((((((..------.))))))....)).)))).............)))... ( -21.20)
>DroYak_CAF1 91181 102 + 1
AGGCCAUAAAUUAAUGUUAUAGACCAAGUUUUGAUAAGACAUUGACGCCGUCUGCGAGUCGGCGACGCAGACGUCGACCAAAGCUCGGCAUUAAACCAACAA------
..(((.....((((((((.((...((.....)).)).))))))))((.((((((((.(....)..)))))))).))..........))).............------ ( -26.10)
>DroAna_CAF1 102072 81 + 1
UGGCUAUAAAUUAAUGUUAUAGACCAAGUUUUGAUAAGACAUUGACGCCGUCUGUGAGGCGGCGG------CGACCGCAAC----------------AACAA-----G
(((((((((.......)))))).))).((((.....)))).(((.(((((((.....)))))))(------(....))...----------------..)))-----. ( -22.60)
>DroPer_CAF1 132228 89 + 1
UGGCUAUAAAUUAAUGUUAUAGACCAAGUUUUGAUAAGGCAUUGACGCCGUCUGCUCGGCGGCGA------CGACAACC---GCCAGA----GCAACAACAA------
(((((((((.......)))))).))).(((.......(((......)))((.((((((((((...------......))---))).))----))))))))..------ ( -28.40)
>consensus
UGGCCAUAAAUUAAUGUUAUAGACCAAGUUUUGAUAAGACAUUGACGCCGUCUGCGAGGCGGCGA______CGACGACCAA_GCCCGG____AAACCAACAA______
.(((......((((((((.((...((.....)).)).))))))))(((((.(.....).)))))..................)))....................... (-15.50 = -15.67 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:10 2006