| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,263,793 – 14,263,885 |
| Length | 92 |
| Max. P | 0.650932 |
| Location | 14,263,793 – 14,263,885 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 75.55 |
| Mean single sequence MFE | -36.52 |
| Consensus MFE | -19.45 |
| Energy contribution | -21.07 |
| Covariance contribution | 1.62 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650932 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14263793 92 - 22407834 CUGGAGUUCCGUGGAGUUGUCGUUGAGC---GGCAUGCUAUAAUCCUGUAGGUCCUUGGCAGUGGAGAAUCCACGCAACCGUUUCCGCUGCCUUU ...(((..((..(((..(((((.....)---))))........)))....))..)))(((((((((((.............)))))))))))... ( -29.62) >DroPse_CAF1 122265 95 - 1 CGACAGCUCCUGGGAGCUAUCGUUGAGAGCUGGCAGGUCGUAUUCCUUGAGCAUGUGGGCUGGGGACAGGCCGUGUAAUCGCUUGCCCUUACGCU (((.(((((....))))).))).((((.((.((((((.......))).((..(..(((.(((....))).)))..)..))))).)).)))).... ( -36.90) >DroSec_CAF1 96568 92 - 1 CUGGAGUUCCGUGGAGUUGUCGUUGAGC---GGCAGACUAUAGUCCUGGAGAUCCUUGGCAGUGGAGAAUCCGCGCAAGCGUUUCCGCUGCCUUU ..(((.(((((.(((.(.((((((....---))).)))...).)))))))).)))..(((((((((((...(((....))))))))))))))... ( -42.40) >DroSim_CAF1 88631 92 - 1 CUGGAGUUCCGUGGAGUUGUCGUUGAGC---GGCAGGCUAUAGUCCUGGAGAUCCUUGGCAGUGGAGAAUCCACGCAAGCGUUUCCGCUGCCUUU ..(((.(((((.(((.((((((.....)---))))......).)))))))).)))..(((((((((((...(.(....).))))))))))))... ( -36.90) >DroEre_CAF1 97701 92 - 1 CUGGAGUUCCGAGGAGCUGUCGUUGAGC---GGCAGGCUAUAAUCCUGGAGGUCCUUGGCACUGGAGAAUCCGCGCAAGCGCUUCCUCUGCCUUU ..(((.((((.(((((((((((.....)---)))).)).....)))))))).)))..((((..((((....(((....))).))))..))))... ( -38.80) >DroPer_CAF1 127964 95 - 1 CGACAGCUCCUGGGAGCUAUCGUUGAGAGCUGGCAGGUCGUAUUCCUUGAGCAUUUGGGCUGGGGACAGGCCGUGUAAUCGCUUGCCCUUACGCU (((.(((((....))))).))).((((.((.((((((.......))).((..((.(((.(((....))).))).))..))))).)).)))).... ( -34.50) >consensus CUGGAGUUCCGUGGAGCUGUCGUUGAGC___GGCAGGCUAUAAUCCUGGAGAUCCUUGGCAGUGGAGAAUCCGCGCAAGCGCUUCCGCUGCCUUU ..(((.(((((.(((((.((((((.......))).))).))..)))))))).)))..((((((((((.....(((....)))))))))))))... (-19.45 = -21.07 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:09 2006