| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,260,149 – 14,260,245 |
| Length | 96 |
| Max. P | 0.516476 |
| Location | 14,260,149 – 14,260,245 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.74 |
| Mean single sequence MFE | -24.89 |
| Consensus MFE | -17.81 |
| Energy contribution | -17.67 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14260149 96 + 22407834 CUCUAAUUGGGCAUAAUUUAAAUUCCGCUCGUGAGCGCCAUGAAUUGUAUUUAACGUU-UUGGCGCUUCCCCAACUUGGGAUUUGGACUCUCUA----UGG------------------- (((.....)))((((.(((((((((((...(..(((((((.....(((.....)))..-.)))))))..)......))))))))))).....))----)).------------------- ( -22.40) >DroVir_CAF1 141651 106 + 1 CUCUAAUUGGGCAUAAUUUAAAUUCCGCUCGUGAGCGCCAUGAAUUGUAUUUAACGUUUUUGGCGCUUCCAAAG-UUG-GACUC----UGGGCA----UCGAUACCGAACAGA----AAU .(((((((((((..............))))(..(((((((.((((.((.....)))))).)))))))..)..))-)))-)).((----((....----(((....))).))))----... ( -28.74) >DroPse_CAF1 118233 95 + 1 CUCUAAUUGGGCAUAAUUUAAAUUCCGCUCGUGAGCGCCAUGAAUUGUAUUUAACGUU-UUGGCGCUUCCCCAACUUG-GACUGCGACUCUCUU----CGG------------------- .(((((((((((..............))..(..(((((((.....(((.....)))..-.)))))))..))))).)))-))...(((......)----)).------------------- ( -21.34) >DroGri_CAF1 96783 109 + 1 CUCUAAUUGGGCAUAAUUUAAAUUCCGCUCGUGAGCGCCAUGAAUUGUAUUUAACGUU-UUGGCGCUUCCAAAG-UUG-GAGCC----CAGGCA----UCGAUACCAUACACACCGACAU ........((((..............))))(..(((((((.....(((.....)))..-.)))))))..)...(-(((-(.((.----...)).----..(....).......))))).. ( -25.74) >DroMoj_CAF1 156970 109 + 1 CUCUAAUUGGGCAUAAUUUAAAUUCCGCUCGUGAGCGCCAUGAAUUGUAUUUAAUGUUUUUGGCGCUUCCAAAG-UUG-GAUUCGAGCCGAGUA----UCGAUACCAAAUACA----AA- ......((((.....(((.(.((((.(((((..(((((((.((((..........)))).)))))))((((...-.))-))..))))).)))).----).))).)))).....----..- ( -28.40) >DroAna_CAF1 94216 101 + 1 CUCUAAUUGGGCAUAAUUUAAAUUCCGCUCGUGAGCGCCAUGAAUUGUAUUUAACGUU-UUGGCGCUUCCCCAACAUGGGACUUGGACUCUCUUCUCCUGGC------------------ ........((((..............))))..((((((((.....(((.....)))..-.)))))))).(((.....))).((.(((........))).)).------------------ ( -22.74) >consensus CUCUAAUUGGGCAUAAUUUAAAUUCCGCUCGUGAGCGCCAUGAAUUGUAUUUAACGUU_UUGGCGCUUCCAAAA_UUG_GACUCGGACUCUCUA____UCGA__________________ ........((((..............))))(..(((((((.....(((.....)))....)))))))..).................................................. (-17.81 = -17.67 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:08 2006