Locus 4959

Sequence ID 2L_DroMel_CAF1
Location 14,236,007 – 14,236,097
Length 90
Max. P 0.998849
window7865

overview

Window 5

Location 14,236,007 – 14,236,097
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 96.33
Mean single sequence MFE -21.48
Consensus MFE -20.89
Energy contribution -20.87
Covariance contribution -0.03
Combinations/Pair 1.09
Mean z-score -1.79
Structure conservation index 0.97
SVM decision value 3.25
SVM RNA-class probability 0.998849
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14236007 90 + 22407834
UACAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGUCUAGGCCUGCCUUCGGGCCAAAAGACUUUCCACAAGAAA-AGGC
................(((((......(((.....)))((((((((((((((....)))..))))))))))).)))))........-.... ( -21.50)
>DroSec_CAF1 68696 90 + 1
UACAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGUCUAGGCCUGCCUUCGGGCCAAAAGACUUUCCACAAGAAA-AGGC
................(((((......(((.....)))((((((((((((((....)))..))))))))))).)))))........-.... ( -21.50)
>DroSim_CAF1 60926 90 + 1
UACAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGUCUAGGCCUGCCUUCGGGCCAAAAGACUUUCCACAAGAAA-AGGC
................(((((......(((.....)))((((((((((((((....)))..))))))))))).)))))........-.... ( -21.50)
>DroEre_CAF1 69785 90 + 1
UGCAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGUCUAGGCCUGCCUUCGGGCCA-AAGACUUUCGACAAGAAAAAGGC
............(((..((((((.((.........))))))))..)))...(((((((....)))..-.....((((.....)))).)))) ( -20.50)
>DroYak_CAF1 58130 90 + 1
UACAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGCCUAGGCCUGCCUUCGGGCCA-AAGACUUUCCACAAGAAAAAGGC
................(((((......(((.....)))..((((((((((((....)))..))))))-)))..)))))............. ( -19.60)
>DroAna_CAF1 71154 91 + 1
UACAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGCCUAGGCCUGCCUUCGGGCCAAGAGACUUUCCACCAGAAAAAAGC
................(((((......(((.....)))((((((((((((((....)))..))))))))))).)))))............. ( -24.30)
>consensus
UACAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGUCUAGGCCUGCCUUCGGGCCAAAAGACUUUCCACAAGAAA_AGGC
................(((((......(((.....)))((((((((((((((....)))..)))))))))))))))).............. (-20.89 = -20.87 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:59 2006