Locus 4958

Sequence ID 2L_DroMel_CAF1
Location 14,234,619 – 14,234,732
Length 113
Max. P 0.567915
window7864

overview

Window 4

Location 14,234,619 – 14,234,732
Length 113
Sequences 3
Columns 113
Reading direction reverse
Mean pairwise identity 98.82
Mean single sequence MFE -14.10
Consensus MFE -12.90
Energy contribution -12.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.73
Structure conservation index 0.91
SVM decision value 0.07
SVM RNA-class probability 0.567915
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14234619 113 - 22407834
CAAAAUAAACUCUCCAUGACAGCAGCUCUGUUAAGUUAACAUUGCUCAAGCAACAUUUUCUGAAAAGACAUAACACUCUCCACUCUCCAAUUUUUAUUCUCUCAGUUUGUUAU
...((((((((.....((((((.....)))))).((((...((((....)))).....(((....)))..)))).............................)))))))).. ( -16.50)
>DroSec_CAF1 67360 113 - 1
UAAAAUAAACUCUCCAUGACAGCAGCUCUGUUAAGUUAACAUUGCUCAAGCAACAUUUUCUGAAAAAACAUAACACUCUCCACUCUCCAAUUUUUAUUCUCUCAGUUUGUUAU
...((((((((.....((((((.....)))))).((((...((((....))))((.....))........)))).............................)))))))).. ( -12.90)
>DroSim_CAF1 59582 113 - 1
UAAAAUAAACUCUCCAUGACAGCAGCUCUGUUAAGUUAACAUUGCUCAAGCAACAUUUUCUGAAAAAACAUAACACUCUCCACUCUCCAAUUUUUAUUCUCUCAGUUUGUUAU
...((((((((.....((((((.....)))))).((((...((((....))))((.....))........)))).............................)))))))).. ( -12.90)
>consensus
UAAAAUAAACUCUCCAUGACAGCAGCUCUGUUAAGUUAACAUUGCUCAAGCAACAUUUUCUGAAAAAACAUAACACUCUCCACUCUCCAAUUUUUAUUCUCUCAGUUUGUUAU
...((((((((.....((((((.....)))))).((((...((((....))))((.....))........)))).............................)))))))).. (-12.90 = -12.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:58 2006