Locus 4956

Sequence ID 2L_DroMel_CAF1
Location 14,226,217 – 14,226,319
Length 102
Max. P 0.588884
window7862

overview

Window 2

Location 14,226,217 – 14,226,319
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 92.94
Mean single sequence MFE -27.46
Consensus MFE -21.70
Energy contribution -22.18
Covariance contribution 0.48
Combinations/Pair 1.08
Mean z-score -1.51
Structure conservation index 0.79
SVM decision value 0.11
SVM RNA-class probability 0.588884
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14226217 102 - 22407834
GAGAAACUCGAUUUUGUAUCUACCCCAAAAGUGCGAGUAUCUCAAGUCUGGGGGAAGUCUCGGUCGCAGUUCUUAGUACUACUACUACACAGGGAAAAAUGU
((((.(((((.(((((.........)))))...))))).))))..(.((((((....)))))).)(((.(((((((((....))))).....))))...))) ( -24.50)
>DroSec_CAF1 59029 102 - 1
GAGAAACUCGAUUUUGUAUCUACCCCAAAAGUGCGAGUAUCUGAAGUCUGGCUGAAGUCUCGGUCGCAGUUCUUAGUGCUACUACUGCACAGAGAAAAAUGU
.(((.(((((.(((((.........)))))...))))).))).......((((((....))))))(((.(((((.((((.......)))).)))))...))) ( -29.10)
>DroSim_CAF1 51212 102 - 1
GAGAAACUCGAUUUUGUAUCUACCCCAAAAGUGCGAGUAUCUGAAGUCUGGCUGAAGUCUCGGUCGCAGUUCUUAGUGCUACUACUGCACAGAGAAAAAUGU
.(((.(((((.(((((.........)))))...))))).))).......((((((....))))))(((.(((((.((((.......)))).)))))...))) ( -29.10)
>DroEre_CAF1 60003 99 - 1
GAGAAACUCGAUUUUGUAUCUACCUCAAAAGUGCGAGUAUCUCGAGUCUGGCUCAAGUCUCGGUUGCAGUUCUUA---CUACUACUGCACAGAGAAAAAUGU
((((.(((((.(((((.........)))))...))))).))))(((.....)))...((((...((((((.....---.....))))))..))))....... ( -29.50)
>DroYak_CAF1 48235 102 - 1
GAGAAACUCGAUUUUGUAUCUACCUCAAAAGUGCGAGUACCUCAAGUCUGGCUCAAGUCUCGGUCGCAGUUCUUAACACUACUGCUGCACAGAGAAAAAUGU
(((..(((((.(((((.........)))))...)))))..))).......((.....((((.((.(((((..........))))).))...)))).....)) ( -25.10)
>consensus
GAGAAACUCGAUUUUGUAUCUACCCCAAAAGUGCGAGUAUCUCAAGUCUGGCUGAAGUCUCGGUCGCAGUUCUUAGUACUACUACUGCACAGAGAAAAAUGU
((((.(((((.(((((.........)))))...))))).))))..............((((.((.(((((.............))))))).))))....... (-21.70 = -22.18 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:56 2006