Locus 4955

Sequence ID 2L_DroMel_CAF1
Location 14,225,304 – 14,225,394
Length 90
Max. P 0.685965
window7861

overview

Window 1

Location 14,225,304 – 14,225,394
Length 90
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 79.27
Mean single sequence MFE -26.22
Consensus MFE -16.60
Energy contribution -16.16
Covariance contribution -0.44
Combinations/Pair 1.21
Mean z-score -1.57
Structure conservation index 0.63
SVM decision value 0.32
SVM RNA-class probability 0.685965
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14225304 90 + 22407834
UU---ACCAUUCC-GUGCGCUCGA----UGAGUGUCAAGAACUUGUCUUGGCCAUAA-AGAGAAACCGGCAGAAAUGUGCACCAAAUGCAA----CAGUCAAA
..---..((((..-((((.(((.(----((...(((((((.....))))))))))..-.)))......(((....)))))))..))))...----........ ( -21.30)
>DroVir_CAF1 86308 95 + 1
UU---GUCUGCUUGCUGGGCUU-U----UGAGUGUCAAGAACUUGUCUUGGCCAUAAAAGAGAAACCGGCAGCAAUGUGCACCAAAUGCACCAUCAAGCCAAA
((---(.(((((.(((((.(((-(----(..(((((((((.....)))))).)))..)))))...))))))))...(((((.....))))).....)).))). ( -30.30)
>DroPse_CAF1 70229 101 + 1
CUCCCUCCGUUGC-ACACACUCGAGUGGCGAGUGUCAAGAACUUGUCUUGGCCAUAA-AGAGAAACCGGCAGAAAUGUGCACCAAAUGCAGCAGACAGUCAAA
.....((.(((((-(....(((..(((((.((.(.(((....))).))).)))))..-.)))......(((....)))........)))))).))........ ( -24.80)
>DroYak_CAF1 47328 90 + 1
UU---ACCAUUUC-GUGCGCUCGA----UGAGUGUCAAGAACUUGUCUUGGCCAUAA-AGAGAAACCGGCAGAAAUGUGCACCAAAUGCAA----CAGUCAAA
..---..(((((.-((((.(((.(----((...(((((((.....))))))))))..-.)))......(((....))))))).)))))...----........ ( -22.90)
>DroMoj_CAF1 97353 95 + 1
CU---GUCUGCUCGCUGGGCUU-U----UGAGUGUCAAGAACUAGUCUUGGCCAUAAAAGAGAAACCGGCAGCAAUGUGCACCAAAUGCACCAACAGGCCAAA
((---((.((((.(((((.(((-(----(..(((((((((.....)))))).)))..)))))...)))))))))..(((((.....)))))..))))...... ( -33.20)
>DroPer_CAF1 70335 101 + 1
CUCCCUCCGUUGC-ACACACUCGAGUGGCGAGUGUCAAGAACUUGUCUUGGCCAUAA-AGAGAAACCGGCAGAAAUGUGCACCAAAUGCAGCAGACAGUCAAA
.....((.(((((-(....(((..(((((.((.(.(((....))).))).)))))..-.)))......(((....)))........)))))).))........ ( -24.80)
>consensus
CU___ACCAUUUC_AUGCGCUCGA____UGAGUGUCAAGAACUUGUCUUGGCCAUAA_AGAGAAACCGGCAGAAAUGUGCACCAAAUGCAACA__CAGUCAAA
..................(((((.....)))))(((((((.....)))))))...............(((.......((((.....)))).......)))... (-16.60 = -16.16 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:55 2006