Locus 4953

Sequence ID 2L_DroMel_CAF1
Location 14,224,383 – 14,224,482
Length 99
Max. P 0.960770
window7858

overview

Window 8

Location 14,224,383 – 14,224,482
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 94.95
Mean single sequence MFE -26.66
Consensus MFE -24.70
Energy contribution -24.46
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -1.50
Structure conservation index 0.93
SVM decision value 1.52
SVM RNA-class probability 0.960770
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14224383 99 - 22407834
AGAGUAUUGAAAGUGCUACUGCAGCUUGAGAGCCUUCCCUUACCUUGGCUAUCUAUCCAUCAAAAUGGGCAGCAUGUUGCACGUGCUCUGAACACCUUA
(((((((.....((((.(((((.((..((.((((............)))).))...((((....)))))).))).)).))))))))))).......... ( -27.20)
>DroSec_CAF1 57175 99 - 1
AGAGUAUUGAAAGUGCUACUGCAGCUGGCGAGCCUUCCCUUACCUUGGCUAUCUAUCCAUCAAAAUGGGCAGCGUGUUGCACGUGCUCUGUACACCUUA
(((((((.....((((....(((((((...((((............)))).....(((((....))))))))).))).))))))))))).......... ( -27.30)
>DroSim_CAF1 49368 99 - 1
AGAGUAUUGAAAGUGCUACUGCAGCUGGCGAGCCUUCCCUUACCUAGGCUAUCUAUCCAUCAAAAUGGGCAGCGUGUUGCACGUGCUCUGUACACCUUA
(((((((.....((((....(((((((...(((((..........))))).....(((((....))))))))).))).))))))))))).......... ( -28.40)
>DroEre_CAF1 58159 99 - 1
AGAGUAUUAAAAGUGCUACUGCAGCUUAAAAGCCUUCCCUUACCUUGGCUAUCUAUCCAUCAAAAUGGGCAGCAUGUUGCACGUGCUCCGAACACCUUA
.((((((.....((((.(((((.((.....((((............))))......((((....)))))).))).)).))))))))))........... ( -24.50)
>DroYak_CAF1 46404 99 - 1
AGAGUAUUAAAAGUGCUACUGCAGCUUGAAAGCCUUCCCUUACCUUGGCUAUCUAUCCAUCAAAAUGGGCAGCAUGUUGCACGUGCUCCGAACACCUUA
.((((((.....((((.(((((.((..((.((((............)))).))...((((....)))))).))).)).))))))))))........... ( -25.90)
>consensus
AGAGUAUUGAAAGUGCUACUGCAGCUUGAGAGCCUUCCCUUACCUUGGCUAUCUAUCCAUCAAAAUGGGCAGCAUGUUGCACGUGCUCUGAACACCUUA
.((((((.....((((.(((((.((.....((((............))))......((((....)))))).))).)).))))))))))........... (-24.70 = -24.46 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:52 2006