Locus 495

Sequence ID 2L_DroMel_CAF1
Location 1,483,828 – 1,483,931
Length 103
Max. P 0.825837
window790

overview

Window 0

Location 1,483,828 – 1,483,931
Length 103
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 90.03
Mean single sequence MFE -26.93
Consensus MFE -22.11
Energy contribution -22.78
Covariance contribution 0.67
Combinations/Pair 1.11
Mean z-score -2.40
Structure conservation index 0.82
SVM decision value 0.70
SVM RNA-class probability 0.825837
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1483828 103 + 22407834
GCUGGCGGGAAAAAAUCCCAGUAAUUAGACAAGUAAUUAGUGUGGAUUUUUCAAACGAGCUGCAAAGAACAGGGCCGAGAAAAUAGACCGCCGGAAUGGCAAA
.(((((((((((((.(((((.((((((......)))))).)).)))))))))...((.(((...........)))))..........)))))))......... ( -30.10)
>DroSec_CAF1 101626 103 + 1
GCUGGCGGGAAAAAAUCCCAGUAAUUAGACAAGUAAUUAGUGUGGAUUUUUCAAACGAGCUGCAAAGAACAGGCACGAGCAAAUAGACCGCCGGAAUGGCGAA
.(((((((((((((.(((((.((((((......)))))).)).)))))))))...((.(((..........))).))..........)))))))......... ( -30.80)
>DroSim_CAF1 103924 103 + 1
GCUGGCGGGAAAAAAUCCCAGUAAUUAGACAAGUAAUUAGUGUGGAUUUUUCCAACGAGCUGCAAAGAACAGGCACGAGCAAAUAGACCGCCGGAAUGGCGAA
.((((((((.((((((((((.((((((......)))))).)).)))))))).)..((.(((..........))).))..........)))))))......... ( -31.10)
>DroEre_CAF1 107459 103 + 1
GCUGGCGGGAAAAAAUCCCAGUAAUUAGACAAGUAAUUAGUGUGGAUUUUUCAAACGAGCUGCAAAGAACAGGGCCGGGAAAAUAGACCGACGAAAUGGCGAA
((((((..((((((.(((((.((((((......)))))).)).))))))))).......(((.......))).)))((.........))........)))... ( -23.70)
>DroYak_CAF1 104659 103 + 1
GCUGGCGGGAAAAAAUCCCAGUAAUUAGACAAGUAAUUAGUGUGGAUUUUUCAAACGAGCUGCAAAGAACAGGGACGAGAAAAUAGACCGACAGAAUGGCGAA
.(((.(((((((((.(((((.((((((......)))))).)).)))))))))...((..(((.......)))...))..........))).)))......... ( -22.10)
>DroAna_CAF1 102736 91 + 1
CCUGGCGGGAAAAAAUCCCAGUAAUUAGACAAGUAAUUAGUGAGGAUUUUUCAAACGAGCUGCGAAGAACGG------------AGAACGUCCAAAUGGGUAA
((((...(((((((((((((.((((((......)))))).)).))))))))....((..((.((.....)).------------))..)))))...))))... ( -23.80)
>consensus
GCUGGCGGGAAAAAAUCCCAGUAAUUAGACAAGUAAUUAGUGUGGAUUUUUCAAACGAGCUGCAAAGAACAGGGACGAGAAAAUAGACCGCCGGAAUGGCGAA
.(((((((((((((.(((((.((((((......)))))).)).))))))))).......(((.......)))...............)))))))......... (-22.11 = -22.78 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:30 2006