Locus 4949

Sequence ID 2L_DroMel_CAF1
Location 14,209,556 – 14,209,648
Length 92
Max. P 0.901152
window7852 window7853

overview

Window 2

Location 14,209,556 – 14,209,648
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 94.60
Mean single sequence MFE -23.24
Consensus MFE -22.25
Energy contribution -21.64
Covariance contribution -0.61
Combinations/Pair 1.21
Mean z-score -0.85
Structure conservation index 0.96
SVM decision value 0.22
SVM RNA-class probability 0.639262
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14209556 92 + 22407834
UGUUCUUUUUGGCAUGCAAUAAAUUUGUGUUUUCUGGUCACUUGCAAAAAGAAACGCACUGACAGCUGUCAGUGUCUGUAUCGCGCCACGAG
.........((((.(((((.......(((.........))))))))....((.((((((((((....))))))))..)).))..)))).... ( -23.11)
>DroSec_CAF1 42316 91 + 1
UGUUCUUUUUGGCAUGCAAUAAAUUUGUGUUUUCUGGUCACUUGCAAAAAGAAACGCACUGACAGCUGUCAGUGUCUGUAUCGCGCCGU-CG
..........(((.(((((.......(((.........))))))))....((.((((((((((....))))))))..)).))..)))..-.. ( -22.51)
>DroSim_CAF1 34547 91 + 1
UGUUCUUUUUGGCAUGCAAUAAAUUUGUGUUUUCUGGUCACUUGCAAAAAGAAACGCACUGACAGCUGUCAGUGUCUGUAUCGCGCCGU-CG
..........(((.(((((.......(((.........))))))))....((.((((((((((....))))))))..)).))..)))..-.. ( -22.51)
>DroEre_CAF1 42074 91 + 1
UGUUCCUUUUGGCAUGCAAUAAAUUUGUGUUUUCUGGUCACUUGCAAAAAGAAACGCACUGACAGCUGUCAGUGUCUGUAUCGCGCCGU-CG
..........(((.(((((.......(((.........))))))))....((.((((((((((....))))))))..)).))..)))..-.. ( -22.51)
>DroYak_CAF1 31426 91 + 1
UGUUCUUUUUGGCAUGCAAUAAAUUUGUGUUUUCUGGUCACUUGCAAAAAGAAACGCACUGACAGCUGUCAGUGUCUGUAAUGCGCCGU-CG
..........(((((((((.....)))))).............(((...((....((((((((....))))))))))....))))))..-.. ( -21.80)
>DroAna_CAF1 42224 89 + 1
UUUGCUUUUUGGCAUGCAAUAAAUUUGUGUUUUCUGGUCACUUGCGA--AGCAACGCACUGACAGCUGUCAGUGUCUGUAGCGCGCUGU-CG
..........((((.((.........(((.........)))..(((.--.(((..((((((((....)))))))).)))..))))))))-). ( -27.00)
>consensus
UGUUCUUUUUGGCAUGCAAUAAAUUUGUGUUUUCUGGUCACUUGCAAAAAGAAACGCACUGACAGCUGUCAGUGUCUGUAUCGCGCCGU_CG
.........((((.(((((.......(((.........))))))))....((.((((((((((....))))))))..)).))..)))).... (-22.25 = -21.64 +  -0.61)

alignment

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secondary structure

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dotplot

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Window 3

Location 14,209,556 – 14,209,648
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 94.60
Mean single sequence MFE -22.18
Consensus MFE -19.77
Energy contribution -20.30
Covariance contribution 0.53
Combinations/Pair 1.05
Mean z-score -1.60
Structure conservation index 0.89
SVM decision value 1.02
SVM RNA-class probability 0.901152
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14209556 92 - 22407834
CUCGUGGCGCGAUACAGACACUGACAGCUGUCAGUGCGUUUCUUUUUGCAAGUGACCAGAAAACACAAAUUUAUUGCAUGCCAAAAAGAACA
.((.((((((((((..(.(((((((....))))))))((...((((((........))))))..)).....))))))..))))....))... ( -23.30)
>DroSec_CAF1 42316 91 - 1
CG-ACGGCGCGAUACAGACACUGACAGCUGUCAGUGCGUUUCUUUUUGCAAGUGACCAGAAAACACAAAUUUAUUGCAUGCCAAAAAGAACA
..-..(((((((((..(.(((((((....))))))))((...((((((........))))))..)).....))))))..))).......... ( -22.20)
>DroSim_CAF1 34547 91 - 1
CG-ACGGCGCGAUACAGACACUGACAGCUGUCAGUGCGUUUCUUUUUGCAAGUGACCAGAAAACACAAAUUUAUUGCAUGCCAAAAAGAACA
..-..(((((((((..(.(((((((....))))))))((...((((((........))))))..)).....))))))..))).......... ( -22.20)
>DroEre_CAF1 42074 91 - 1
CG-ACGGCGCGAUACAGACACUGACAGCUGUCAGUGCGUUUCUUUUUGCAAGUGACCAGAAAACACAAAUUUAUUGCAUGCCAAAAGGAACA
..-.............(.(((((((....))))))))(((((((((.(((.(..(..................)..).))).))))))))). ( -23.67)
>DroYak_CAF1 31426 91 - 1
CG-ACGGCGCAUUACAGACACUGACAGCUGUCAGUGCGUUUCUUUUUGCAAGUGACCAGAAAACACAAAUUUAUUGCAUGCCAAAAAGAACA
..-..((((((....((((((((((....)))))))....)))...)))..(((.........))).............))).......... ( -20.50)
>DroAna_CAF1 42224 89 - 1
CG-ACAGCGCGCUACAGACACUGACAGCUGUCAGUGCGUUGCU--UCGCAAGUGACCAGAAAACACAAAUUUAUUGCAUGCCAAAAAGCAAA
.(-.(((((((((((((.(.......))))).)))))))))).--..(((((((.........))).......)))).(((......))).. ( -21.21)
>consensus
CG_ACGGCGCGAUACAGACACUGACAGCUGUCAGUGCGUUUCUUUUUGCAAGUGACCAGAAAACACAAAUUUAUUGCAUGCCAAAAAGAACA
.....(((((((((..(.(((((((....))))))))((..(((.....)))..))...............))))))..))).......... (-19.77 = -20.30 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:47 2006