Locus 4943

Sequence ID 2L_DroMel_CAF1
Location 14,171,146 – 14,171,259
Length 113
Max. P 0.567642
window7843

overview

Window 3

Location 14,171,146 – 14,171,259
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.55
Mean single sequence MFE -32.06
Consensus MFE -19.25
Energy contribution -20.18
Covariance contribution 0.94
Combinations/Pair 1.23
Mean z-score -2.10
Structure conservation index 0.60
SVM decision value 0.07
SVM RNA-class probability 0.567642
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14171146 113 - 22407834
GUUACU---GCUGAAG--CCAUUGUUGCUGGGCAUUCUU-UUGUGCGGCCACAAAUUAAUUACUUAUUUGCUUAGC-CGGUUAGCUAUUUUGUUGGCCAUUAAAAUGCCUUUAGGAAAUC
......---.((((((--.((((...((((((((....(-(((((....)))))).............))))))))-.(((((((......))))))).....)))).))))))...... ( -30.13)
>DroGri_CAF1 9361 117 - 1
GUUGCUAUCGCUGUAGCGCUGCUGGUGCUGUGCAUUCUUUUUGUGUGGCCACGAAUUAAUUACUUAUUUGCGUAGAGCGCACAACUAUUUUGUAGGCAAUUAAAAUGCCUUUAGUUA---
((((((..(((.(((((((.((....)).))))......((((((....)))))).........)))..)))...)))).))(((((......(((((.......))))).))))).--- ( -29.30)
>DroSim_CAF1 6188 113 - 1
GUUGCU---GCUGAAG--CCAUUGUUGCUGGGCAUUCUU-UUGUGCGGCCACAAAUUAAUUACUUAUUUGCUUAGC-CGGCUAGCUAUUUUGUUGGCCAUUAAAAUGCCUUUAGGAAAUC
......---.((((((--.((((...((((((((....(-(((((....)))))).............))))))))-.(((((((......))))))).....)))).))))))...... ( -32.63)
>DroYak_CAF1 9961 113 - 1
UUUGCU---GCUGAGG--CUAUUGUGGCUGGGCAUUCUU-UUGUGCGGCCACAAAUUAAUUACUUAUUUGCUUAGA-CGGCUAGCUAUUUUGUUGGCAAUUAAAAUGCCUUUAGGAAAUC
(((.((---(..((((--(..(((((((((.(((.....-.))).)))))))))......................-..((((((......)))))).........)))))))).))).. ( -36.20)
>consensus
GUUGCU___GCUGAAG__CCAUUGUUGCUGGGCAUUCUU_UUGUGCGGCCACAAAUUAAUUACUUAUUUGCUUAGA_CGGCUAGCUAUUUUGUUGGCAAUUAAAAUGCCUUUAGGAAAUC
..........((((((.....((((.((((.(((.......))).)))).))))...............((.......(((((((......)))))))........))))))))...... (-19.25 = -20.18 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:38 2006