Locus 4942

Sequence ID 2L_DroMel_CAF1
Location 14,167,256 – 14,167,367
Length 111
Max. P 0.970420
window7842

overview

Window 2

Location 14,167,256 – 14,167,367
Length 111
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 73.74
Mean single sequence MFE -40.38
Consensus MFE -27.25
Energy contribution -26.69
Covariance contribution -0.56
Combinations/Pair 1.37
Mean z-score -1.92
Structure conservation index 0.67
SVM decision value 1.66
SVM RNA-class probability 0.970420
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14167256 111 + 22407834
UGAUGCAGAUCCAAACCGGCGGCAGGAGAGGGCAACUGCUGCUGCUGCUGCGGGAACUGU---------GGAGCGGUUUGAAGUUGAUUUUGGGUCGAACGUUGGAACUGCUGAUUGCUG
....((((.(((....(((((((((.((.((....)).)).)))))))))..))).))))---------..((((((((.((((((((.....))).))).)).))))))))........ ( -45.00)
>DroGri_CAF1 3311 120 + 1
UGAUGCAAAUCAAGAUUGCUAGCCGACGUGGGCAACUGUUGCUGCUGCUGUGGUGGCUGUGGAUAUUGUGGUGCAGUCUGCAAUUGAUUUUGGGUGGAGCGCUGGAACUGCUGAUUGUUG
((((....))))(((((((..((((..(((..((...((..(..(....)..)..))..))..)))..)))))))))))(((((((..(((.((((...)))).)))...).)))))).. ( -31.90)
>DroEre_CAF1 7975 90 + 1
UGAUGCAGAUCCAAGCCGGCGGCGGGAGAGGGCAAAUGCUGCUGCUGCUGCGGGAACUGU---------GGAGCGGUUUGCAGUUGAUUUUGGGUCGAA---------------------
.......((((((((((.(((((((.((..(((....))).)).))))))).))(((((.---------.((....))..)))))...))))))))...--------------------- ( -40.40)
>DroYak_CAF1 6248 111 + 1
UGAUGCAGAUCCAAGCCGGCGGCGGGAGAGGGCAACUGCUGCUGCUGCUGCGGGAACUGG---------GGAGCGGUUUGAAGUUGGUUUUGGGUCGAACGUUGGAACUGCUGAUUGCUG
....((((.((((..((.(((((((.((..(((....))).)).))))))).))...)))---------).((((((((.(((((.(........).))).)).))))))))..)))).. ( -44.20)
>consensus
UGAUGCAGAUCCAAACCGGCGGCGGGAGAGGGCAACUGCUGCUGCUGCUGCGGGAACUGU_________GGAGCGGUUUGAAGUUGAUUUUGGGUCGAACGUUGGAACUGCUGAUUGCUG
.......((((((((((.(((((((.((..(((....))).)).))))))).))(((((..............)))))..........))))))))........................ (-27.25 = -26.69 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:37 2006