Locus 4940

Sequence ID 2L_DroMel_CAF1
Location 14,161,290 – 14,161,395
Length 105
Max. P 0.516737
window7840

overview

Window 0

Location 14,161,290 – 14,161,395
Length 105
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 85.40
Mean single sequence MFE -17.23
Consensus MFE -11.43
Energy contribution -12.43
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.66
SVM decision value -0.03
SVM RNA-class probability 0.516737
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14161290 105 - 22407834
GCUUCCCCCUUCCACCUCCACCAUUUCCAUUCAUUGGAUCCUUGCCAGAGGCUGAUUCUGCUGUAAUUGCUAUACUACCUAUUCCGCCUCCACCACCGAUCCCAG
...................................(((((..((...(((((.((.......(((.......))).......)).)))))...))..)))))... ( -17.14)
>DroSec_CAF1 57 105 - 1
GCUUCCCCCUUCCUCCUCCACCAUUUCCAUUCCUUGGAUCCUUGCCAGAGGCUGAUCCUGCUGUAAUUGCUAUACUACCUAUUCCGCCUCCACCGCCGAUCCCAG
................................((.(((((...((..(((((.((.......(((.......))).......)).)))))....)).))))).)) ( -17.14)
>DroSim_CAF1 64 105 - 1
GCUUCCCCCUUCCACCUCCACCAUUUCCAUUCCUUGGAUCCUUGCCAGAGGCUGAUCCUGCUGUAAUUGCUAUACUACCUAUUCCGCCUCCACCGCCGAUCCCAG
................................((.(((((...((..(((((.((.......(((.......))).......)).)))))....)).))))).)) ( -17.14)
>DroEre_CAF1 147 90 - 1
---------------CUCCACCUUUUCCAAUCCUUGGAUCCUUGCCUGUGGCAGAUUCUGCUGCAAUUGCGAUACUACCUAUUCGGCGUCCACCUCCAAUCCCUG
---------------..................(((((....((((((..((((...))))..)).....((..........))))))......)))))...... ( -17.50)
>consensus
GCUUCCCCCUUCCACCUCCACCAUUUCCAUUCCUUGGAUCCUUGCCAGAGGCUGAUCCUGCUGUAAUUGCUAUACUACCUAUUCCGCCUCCACCGCCGAUCCCAG
...................................(((((.......(((((.((.......(((.......))).......)).))))).......)))))... (-11.43 = -12.43 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:35 2006