| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,144,065 – 14,144,157 |
| Length | 92 |
| Max. P | 0.976173 |
| Location | 14,144,065 – 14,144,157 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 83.51 |
| Mean single sequence MFE | -23.80 |
| Consensus MFE | -18.93 |
| Energy contribution | -18.56 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.76 |
| SVM RNA-class probability | 0.976173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14144065 92 + 22407834 GGAGGGGUGCAACUUGCAGUCUAACCUCAAGGCCCCACCCCUAACCCCGGCCCUCGUCGAC-CCCUGCCA--CCCUGCCACCAAACCCUACCGAA (((((((((...((((.((......))))))....))))))).....((((....))))..-........--........))............. ( -21.80) >DroSec_CAF1 232854 92 + 1 GGAGGGGUGCAACUUGCAGUCUAACCUCAAGGCCCCACCCCUAACCCCGGCCCUCGUAGCCACCCUGCCUCUCCCCGCCACCAAUCCCUAC---A (((((((((...((((.((......))))))....)))))))......(((....(..((......))..).....))).)).........---. ( -23.50) >DroSim_CAF1 229315 92 + 1 GGAGGGGUGCAACUUGCAGUCUAACCUCAAGGCCCCACCCCUAACCCCGGCCCUCGUAGCCACCCUGCCUCUCCCCGCCACCAAUCCCUAC---A (((((((((...((((.((......))))))....)))))))......(((....(..((......))..).....))).)).........---. ( -23.50) >DroYak_CAF1 246934 80 + 1 GUAGGGGUGCAACUUGCAGUCUAACCUCAAGGCCCCACCCCUAUUUGCGGCCCUUGAAACC-CCCUGCC-----------CCACACCCCAC---A ((.((((((......((((.......((((((((.((........)).)).))))))....-..)))).-----------...))))))))---. ( -26.42) >consensus GGAGGGGUGCAACUUGCAGUCUAACCUCAAGGCCCCACCCCUAACCCCGGCCCUCGUAGCC_CCCUGCCU__CCCCGCCACCAAACCCUAC___A (((((((((...((((.((......))))))....)))))))....))(((...............))).......................... (-18.93 = -18.56 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:29 2006