Locus 4935

Sequence ID 2L_DroMel_CAF1
Location 14,136,682 – 14,136,782
Length 100
Max. P 0.899710
window7831

overview

Window 1

Location 14,136,682 – 14,136,782
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 97.50
Mean single sequence MFE -29.18
Consensus MFE -24.76
Energy contribution -24.72
Covariance contribution -0.04
Combinations/Pair 1.04
Mean z-score -1.87
Structure conservation index 0.85
SVM decision value 1.01
SVM RNA-class probability 0.899710
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14136682 100 + 22407834
GCGGACGGGGUCCCGUGCCUUUCAUGUAAGGGUUGCGAAAAGUGGCUCAAGGAAAUGCAGGAAACUUGGUUCAAUGGGAUAGAUUGAAUCAAUAUGAUUA
..((((((....)))).))..((((((..((((..(.....)..))))..........((....))(((((((((.......)))))))))))))))... ( -30.40)
>DroSec_CAF1 225502 100 + 1
GCGGACGGGGUCCCAUGCCUUUCAUGUAAGGGUUGCGAAAAGUGGCUCAAGGAAGUGCAGGAAACUUGGUUCAAUGGGAUAGAUUGAAUCAAUAUGAUUA
.....(((.((((((((((((((......((((..(.....)..))))..))))).))((....)).......)))))))...)))((((.....)))). ( -26.80)
>DroSim_CAF1 221977 100 + 1
GCGGACGGGGUCCCAUGCCUUUCAUGUAAGGGUUGCGAAAAGUGGCUCAAGGAAGUGCAGGAAACUUGGUUCAAUGGGAUAGAUUGAAUCAAUAUGAUUA
.....(((.((((((((((((((......((((..(.....)..))))..))))).))((....)).......)))))))...)))((((.....)))). ( -26.80)
>DroEre_CAF1 228348 100 + 1
GCGGACGGGGUCCCUUGCCUUUCAUGUAAGGGUUGCGAAAAGUGGCUCAAGGAAAUGCAGGAUACUUGGUUCAAUGGGAUAGAUUGAAUCAAUAUGAUUA
..((((...))))(((((.((((......((((..(.....)..))))...)))).)))))(((.((((((((((.......)))))))))))))..... ( -28.20)
>DroYak_CAF1 239368 100 + 1
GCGGUCGGGGUCCCAUGCCUUUCAUGUAAGGGUUGCGAAAAGUGGCUCAAGGAAGUGCAGGAAACUUGCUUCAAUGGGAUAGAUUGAAUCAAUAUGAUUA
.(((((...(((((((.............((((..(.....)..))))...((((((.((....)))))))).))))))).)))))((((.....)))). ( -33.70)
>consensus
GCGGACGGGGUCCCAUGCCUUUCAUGUAAGGGUUGCGAAAAGUGGCUCAAGGAAGUGCAGGAAACUUGGUUCAAUGGGAUAGAUUGAAUCAAUAUGAUUA
......((..(((..(((.((((......((((..(.....)..))))...)))).))))))..))(((((((((.......)))))))))......... (-24.76 = -24.72 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:27 2006