Locus 4932

Sequence ID 2L_DroMel_CAF1
Location 14,111,089 – 14,111,186
Length 97
Max. P 0.981255
window7824

overview

Window 4

Location 14,111,089 – 14,111,186
Length 97
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 85.76
Mean single sequence MFE -27.30
Consensus MFE -19.85
Energy contribution -19.98
Covariance contribution 0.12
Combinations/Pair 1.24
Mean z-score -3.03
Structure conservation index 0.73
SVM decision value 1.88
SVM RNA-class probability 0.981255
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14111089 97 + 22407834
G---CUCUCAGCCUUAAAAACUCAUCAUCCAACUAUAUGUUUCUACUCAGCCAUUAGGAAUAGUUCAGUACUGCGGGUUUUUAAGCUUGAGAGUGCGCCU
(---(((((((.(((((((((((..............((((((((.........))))))))((........))))))))))))).))))))))...... ( -27.90)
>DroSec_CAF1 199887 100 + 1
GCUGCUCUCAGCCUUAAAAACUCAUCAUCCAACUAUAUGUUUCUACUCAGCUAUUAGGAAUAGUUCAGUACUGCGGGUUUUUAAGUUUGAGAGUGCCCCC
((.((((((((.(((((((((((.......(((.....)))..((((.((((((.....)))))).))))....))))))))))).)))))))))).... ( -31.70)
>DroSim_CAF1 200695 100 + 1
GCCGCUCUCAGCCUUAAAAACUCAUCAUCCAACUAUAUGUUUCCACUCAGACAUUAGGAAUAGUUCAGUAUUGCGGGUUUUUAAGUUUGAGAGGGCCCCC
(((.(((((((.(((((((((((.........(((.((((((......))))))))).....((........))))))))))))).)))))))))).... ( -32.60)
>DroYak_CAF1 212201 96 + 1
G---CUCUCGACCUUAAAAACUCAUCAUCCAACUAUAUGAUUCUACUGAGCCAUUGAGAACAGUUCAGUACUGCGAGU-UAAAUGUGUGAUAGUAACCCC
(---((.(((..(.....((((((((((........)))))..((((((((...........))))))))....))))-)....)..))).)))...... ( -17.00)
>consensus
G___CUCUCAGCCUUAAAAACUCAUCAUCCAACUAUAUGUUUCUACUCAGCCAUUAGGAAUAGUUCAGUACUGCGGGUUUUUAAGUUUGAGAGUGCCCCC
....((((((..(((((((((((.................((((............))))((((.....)))).)))))))))))..))))))....... (-19.85 = -19.98 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:20 2006