Locus 4931

Sequence ID 2L_DroMel_CAF1
Location 14,105,155 – 14,105,275
Length 120
Max. P 0.550017
window7823

overview

Window 3

Location 14,105,155 – 14,105,275
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.56
Mean single sequence MFE -45.79
Consensus MFE -16.28
Energy contribution -17.73
Covariance contribution 1.45
Combinations/Pair 1.40
Mean z-score -2.28
Structure conservation index 0.36
SVM decision value 0.03
SVM RNA-class probability 0.550017
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14105155 120 + 22407834
GGCGCCACCUGAAAAAUCUUCCUAGCUCGGCCAUUUUGUCGGAUAAUCCCGCUGAUGUGGACCUAUUUGCCGCAUCCACCAGCAAGGGAUUCGGUCGAAGGACCUACCGCAAAGUGGCCU
(((.......((....))......))).((((((((((.(((..((((((((((((((((.(......))))))))....)))..)))))).((((....))))..))))))))))))). ( -47.62)
>DroPse_CAF1 245375 120 + 1
GACGACGUCUGAAGCCUCUUCCCAUUUCCGCAGUUCUCUCGGACAAUCCUGGCGAUGUGGAUCUUUUCGCCGCAUCGACCAGCAAGGGAUUCGGUCGUCGGAUCUACCGCAAGGUGGCCU
..(((((.(((((......((((...((((.((....)))))).....((((((((((((.........)))))))).))))...))))))))).)))))...(((((....)))))... ( -51.10)
>DroGri_CAF1 231161 120 + 1
GACGGCGCCUUCAGCCAUUGCCCAACACUGCUGUGCUCUCCGAUAAUCCCGGCGCCGUGGAUCUGUUUGCCGCCUCCAAGAGCAAAGAUUUUGGUCGUCGCAUCUACCGCAAGGUGGCCU
.((((((((....((....))....(((....)))...............))))))))((.......(((.((..((((((.......))))))..)).))).(((((....))))))). ( -39.70)
>DroWil_CAF1 278109 120 + 1
GCCGACGCUUGCAACCAUUGCCCAACACAGCGAUUCUCUCUGAUAAUCCUGGAGCCGUUGAUUUGUUUGCAGCAUCGGCCAGCAAGGAAUUCGGGCGACGCAACUACCGCAAGGUGGCCU
(((.....((((.....((((((....(((.(.....).)))....((((.(.((((.((...((....)).)).)))))....))))....)))))).))))..(((....)))))).. ( -37.00)
>DroAna_CAF1 192760 120 + 1
GCCGCUGUCUGAAGCCUCUUCCGACAUCUGCCAUUUUGUCGGAUAAUCCGAGAGAUGUGGACCUUUUUGCUGCAUCCACCAGCAAGGGGUUCGGUCGCCGGACUUACCGCAAAGUGGCAU
...(.((((.((((...)))).)))).)((((((((((.(((.(((((((.(.(((.((((((((((.((((.......))))))))))))))))).))))).)))))))))))))))). ( -49.30)
>DroPer_CAF1 252595 120 + 1
GACGACGCCUGAAGCCUCUUCCCAUUUCCGCAGUUCUCUCGGACAAUCCUGGCGAUGUGGAUCUUUUCGCCGCAUCGACCAGCAAGGGAUUCGGUCGUCGGAUCUACCGCAAGGUGGCCU
..(((((.(((((......((((...((((.((....)))))).....((((((((((((.........)))))))).))))...))))))))).)))))...(((((....)))))... ( -50.00)
>consensus
GACGACGCCUGAAGCCUCUUCCCAACUCCGCAAUUCUCUCGGAUAAUCCUGGCGAUGUGGAUCUUUUUGCCGCAUCCACCAGCAAGGGAUUCGGUCGUCGGAUCUACCGCAAGGUGGCCU
................................................((((((((.(((((((.(((((...........))))))))))))))))))))..(((((....)))))... (-16.28 = -17.73 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:19 2006