| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,104,724 – 14,104,820 |
| Length | 96 |
| Max. P | 0.623802 |
| Location | 14,104,724 – 14,104,820 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 89.14 |
| Mean single sequence MFE | -39.35 |
| Consensus MFE | -31.55 |
| Energy contribution | -34.25 |
| Covariance contribution | 2.70 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.623802 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14104724 96 + 22407834 ---GAUGACUGCCUCGUCGGAGGGUUGGAGCAGCAAAAGGAAGCUCUAUGCCAUCGAUGAGCGCGAGGAGAGCUCGCCAGUGACUGUGGGCAAGGUGGA ---..(.((((((((((((..((..((((((..(.....)..))))))..))..))))))).)).......((((((........))))))..))).). ( -34.40) >DroSec_CAF1 193514 96 + 1 ---GAUGACUGCCUCGUCGGAGGUUUGGAGCAGCAAAAGGAAGCUCUAUGCCAUCGAUGAGCGCGAGGAGAGCUCGCCGGUGACUGUGGGCAAGGCGGA ---.....(((((((((((..(((.((((((..(.....)..)))))).)))..)))))).(....)....((((((.(....).))))))..))))). ( -42.40) >DroSim_CAF1 194304 96 + 1 ---GGUGACUGCCUCGUCGGAGGUUUGGAGCAGCAAAAGGAAGUUCUAUGCCAUCGAUGAGCGCGAGGAGAGCUCGCCGGUGACUGUGGGCAAGGCGGA ---.....(((((((((((..(((.((((((..(.....)..)))))).)))..)))))).(....)....((((((.(....).))))))..))))). ( -40.00) >DroEre_CAF1 196430 96 + 1 ---GACGACUGCCACGUCCGAGGGCUGGAGCAGCAAAAGGAAGCUCUAUGCCAUCGAUGAGUGCGAGGAGAGCUCGCCGGUGACUGUGGGCAAGGUGGA ---.....(..((.((((.((.(((((((((..(.....)..)))))).))).))))))............((((((.(....).))))))..))..). ( -36.90) >DroYak_CAF1 205730 96 + 1 ---GAUGACUGCCUCAUCGGAGGGCAGGAGCAGCAAAAGGAAGCUCUAUGCCAUCGAUGAGCGCGAGGAGAGCUCGCCGGUGACUGUGGGCAAGGUGGA ---..(.(((((((((((((..(((((((((..(.....)..))))).)))).)))))))).)).......((((((.(....).))))))..))).). ( -40.60) >DroAna_CAF1 192226 99 + 1 GCCGGGGUUUCCCUCGGCCGAGGAGUGGAGUGGCAAGCGGAAGCUCUAUGCCAUCGAGGAGCGGGAGGAGAGCUCGCCGGUGACUGUGGGCGAGGGGGA .......(..((((((.(((((.(.(((.(((((((((....)))...))))))....((((.........)))).))).)..)).))).))))))..) ( -41.80) >consensus ___GAUGACUGCCUCGUCGGAGGGUUGGAGCAGCAAAAGGAAGCUCUAUGCCAUCGAUGAGCGCGAGGAGAGCUCGCCGGUGACUGUGGGCAAGGUGGA ........((((((((((((.((..((((((..(.....)..))))))..)).)))))))...........((((((.(....).))))))..))))). (-31.55 = -34.25 + 2.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:18 2006