| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,480,635 – 1,480,725 |
| Length | 90 |
| Max. P | 0.764149 |
| Location | 1,480,635 – 1,480,725 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 71.56 |
| Mean single sequence MFE | -33.23 |
| Consensus MFE | -5.32 |
| Energy contribution | -6.52 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.16 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.764149 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1480635 90 + 22407834 ----CAGGAGCUCCAGGGGCCAGAAGUCGG-GCAACUCCCCAAAAAACUGUCUAGUCAUAAAAGUUUGGG-GGGCAAACCCGUGCUGGUGGCUGCG----- ----..((....)).(.(((((..((((((-(...(((((((((....(((......)))....))))))-)))....)))).)))..))))).).----- ( -35.00) >DroSec_CAF1 98532 90 + 1 ----CAGGAGCUCCAGGAGCCAGAAGUCGG-GCGACUCCCCAAAAAACUGUCUAGUCAUAAAAGUUUGGG-GGGAAAGCCUGUGCUGGUGGCUGCG----- ----..((....)).(.(((((..((((((-((..(((((((((....(((......)))....))))))-)))...))))).)))..))))).).----- ( -37.70) >DroSim_CAF1 100809 90 + 1 ----CAGGAGCUCCAGGAGCCAGAAGUCGG-GCGACUCCCCAAAAAACUGUCUAGUCAUAAAAGUUUGGG-GGGAAAGCCUGUGCUGGUGGCUGCG----- ----..((....)).(.(((((..((((((-((..(((((((((....(((......)))....))))))-)))...))))).)))..))))).).----- ( -37.70) >DroEre_CAF1 104323 81 + 1 ----CUG--GCGCCAGGAGCCAGAAGUCGG-GCGGCUCCCCAAAAAACUGUCUAGUCAUAAAAGUUUGGG-GAGAAAGCUUG-------GCAAGCG----- ----(((--((.......)))))..(((((-((..(((((((((....(((......)))....))))))-)))...)))))-------)).....----- ( -34.30) >DroAna_CAF1 99529 92 + 1 GAUGAGG--GCGUUGGAUGGGUGGAGUGGGAGGAACUCCCCAAAAAACUGUCUAGUCAUAAAACUUUUUG-G-CCAGGCUUAUGCUGGUGGCUAGG----- (((..((--(((((.....((.(((((.......)))))))....))).)))).)))..........(((-(-((((((....)))..))))))).----- ( -28.80) >DroPer_CAF1 130850 81 + 1 ----GAGGAUGGAUG----------------GAGACUCCCCAAAAAACUGUCUAGUCAUAAAAGUUUUGGGGGCAAAGCUUAUGCUGGUGGCUGGGGAGGC ----..((..(((.(----------------....))))))......((.(((((((((..((((((((....))))))))......))))))))).)).. ( -25.90) >consensus ____CAGGAGCGCCAGGAGCCAGAAGUCGG_GCGACUCCCCAAAAAACUGUCUAGUCAUAAAAGUUUGGG_GGGAAAGCCUGUGCUGGUGGCUGCG_____ ...................................(((((((((....(((......)))....)))))).)))..((((.........))))........ ( -5.32 = -6.52 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:27 2006