Locus 4926

Sequence ID 2L_DroMel_CAF1
Location 14,087,722 – 14,087,814
Length 92
Max. P 0.848997
window7815

overview

Window 5

Location 14,087,722 – 14,087,814
Length 92
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 65.52
Mean single sequence MFE -13.90
Consensus MFE -8.72
Energy contribution -8.80
Covariance contribution 0.08
Combinations/Pair 1.44
Mean z-score -1.46
Structure conservation index 0.63
SVM decision value 0.78
SVM RNA-class probability 0.848997
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14087722 92 + 22407834
--UUCAUGCAAAAUACCCAUAAAUCGUGGAAAGCCAGC-CGGAGUUUUCCGCACAUUUUUCGGACCCACUCCAAAAUAACACUUUUCCAGACCCA------
--.....................((.(((((((....)-.(((((..((((.........))))...)))))...........))))))))....------ ( -14.80)
>DroGri_CAF1 210725 74 + 1
UGCUCAUGCAAAAGCGCCAUAAAUCGUUGCCAGCCCAG-UUAAGUAUGCCACAUAUUUGGC----------CAGAC----------ACACACACA------
.(((...(((...(((........)))))).)))...(-(((((((((...))))))))))----------.....----------.........------ ( -10.70)
>DroSec_CAF1 176180 98 + 1
--UUCAUGCAAAAUACCCAUAAAUCGUGGAAAGCCCGC-CUGAGUUUUCCACACAUUUUUCGGUCCCACUCCAAAAUAACACUUUUCCAGACCCACAAACA
--.......................(((((((((....-....))))))))).........((((........................))))........ ( -14.86)
>DroSim_CAF1 177050 98 + 1
--UUCAUGCAAAAUACCCAUAAAUCGUGGAAAGCCCGC-CUGAGUUUUCCACACAUUUUUCGGUCCCACUCCAAAAUAACACUUUUCCAGACCCACAAACA
--.......................(((((((((....-....))))))))).........((((........................))))........ ( -14.86)
>DroMoj_CAF1 279940 75 + 1
UGUUCAUGUCAAAGCUCAAUAAAUUGUUGUCUGCUCGCUUUAAGUACGCCACAUAUUUGGC----------CAAAG----------CCAGACACA------
......((((..(((.((((.....))))...))).(((((......((((......))))----------.))))----------)..))))..------ ( -14.30)
>consensus
__UUCAUGCAAAAUACCCAUAAAUCGUGGAAAGCCCGC_CUGAGUUUUCCACACAUUUUUCGG_CCCACUCCAAAAUAACACUUUUCCAGACCCA______
.........................(((((((((.........)))))))))................................................. ( -8.72 =  -8.80 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:11 2006