| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,082,065 – 14,082,159 |
| Length | 94 |
| Max. P | 0.928824 |
| Location | 14,082,065 – 14,082,159 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 83.52 |
| Mean single sequence MFE | -24.94 |
| Consensus MFE | -16.68 |
| Energy contribution | -17.62 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.16 |
| Mean z-score | -4.00 |
| Structure conservation index | 0.67 |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.928824 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14082065 94 + 22407834 GGCAGCAAAGUCAAAUGUUGUACAUAAAUAUUUGGCUUUGAAGUC-UAAAGCGAAUAUACGUGCUGAUGC-----AACCAAAAUAAAUGUUUCCAAAAAA (((..((((((((((((((.......))))))))))))))..)))-....(((......)))((....))-----......................... ( -21.20) >DroPse_CAF1 211290 94 + 1 GGCUCAAAAGUCAAAUGGUAUACUC-UAUCGAUGACUUUGGGGUCCUUAAGGAAAUCAA---ACUGAUGCCAAAAAACCAAGAGAAUAGUUUCUAAA--A (((((((((((((..(((((.....-))))).)))))))((..(((....)))..))..---..))).))).........(((((....)))))...--. ( -20.80) >DroSec_CAF1 170687 92 + 1 GGCAGCAAAGUCAAAUGUUGUACACAAAUAUUUGGCUUUGAAGUC-UAAAGGAAAUAUACGUGCUGGUGC-----AACCAAAAUAAAUGUUUCCAAA--A (((..((((((((((((((.......))))))))))))))..)))-....((((((((..((..(((...-----..)))..))..))))))))...--. ( -30.20) >DroSim_CAF1 171557 92 + 1 GGCAGCAAAGUCAAAUGUUGUACACAAAUAUUUGGCUUUGAAGUC-UAAAGGAAAUAUACGUGCUGGUGC-----AACCAAAAUAAAUGUUUCCAAA--A (((..((((((((((((((.......))))))))))))))..)))-....((((((((..((..(((...-----..)))..))..))))))))...--. ( -30.20) >DroEre_CAF1 173395 92 + 1 GGCAGCAAAGUCAAAUGUUGUACAUAAAUAUUUGGCUUUGAAGUC-UUAAAGGAAUAUAAGUGCUGAUGC-----AACAAAGAUAAAUGUUUCCAAA--A (((..((((((((((((((.......))))))))))))))..)))-.....((((......(((....))-----)(((........)))))))...--. ( -24.10) >DroYak_CAF1 181381 92 + 1 GGCAGCAAAGUCAAAUGUUGUGCAUAAAUAUUUGGCUUUGAAGUC-UAAAAGAAAUAUAAGUGCUGAUGC-----AACAAAGAUAAAUGUUUCCAAA--A (((..((((((((((((((.......))))))))))))))..)))-.....(((((((...(((....))-----)..........)))))))....--. ( -23.12) >consensus GGCAGCAAAGUCAAAUGUUGUACACAAAUAUUUGGCUUUGAAGUC_UAAAGGAAAUAUACGUGCUGAUGC_____AACCAAAAUAAAUGUUUCCAAA__A (((..((((((((((((((.......))))))))))))))..))).....((((((((............................))))))))...... (-16.68 = -17.62 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:10 2006