| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,081,635 – 14,081,732 |
| Length | 97 |
| Max. P | 0.617802 |
| Location | 14,081,635 – 14,081,732 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 80.53 |
| Mean single sequence MFE | -23.66 |
| Consensus MFE | -19.57 |
| Energy contribution | -19.35 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.617802 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14081635 97 + 22407834 CGA-AACUU-UUCAUCUGAUAUCUAGGUGUUACCAUCUUGCUCUCGCUGACCGUGUUUCUGAAUAUGGUUGCCGAGACAAUGCCGGCUACUUCCGAUGC ...-.....-..((((((.....))))))....(((((((.(((((..(((((((((....)))))))))..))))))))....((......)))))). ( -24.70) >DroVir_CAF1 303633 85 + 1 --------------UUUAAUAUCUAGGCGUUACGAUUUUGCUCUCGCUGACCGUGUUCCUCAAUAUGGUUGCCGAGACAAUGCCGGCCACCUCAGAUGC --------------.....((((((((.(...((...(((.(((((..(((((((((....)))))))))..))))))))...))..).))).))))). ( -26.20) >DroGri_CAF1 204619 87 + 1 --U----U------UUUAAUGUCUAGGCGUUACGAUCUUGCUCUCGUUGACCGUGUUCCUCAAUAUGGUUGCCGAGACAAUGCCAGCCACCUCAGAUGC --.----.------......(((((((.(........(((.(((((..(((((((((....)))))))))..)))))))).......).))).)))).. ( -23.16) >DroMoj_CAF1 270722 89 + 1 CGU----U------UUCUAUAUCUAGGCGUUACGAUCUUGCUUUCGUUGACCGUGUUCCUUAAUAUGGUUGCCGAGACAAUGCCCGCCACCUCAGAUGC ...----.------.....((((((((.(...((..((((.(((((..(((((((((....)))))))))..)))))))).)..)).).))).))))). ( -22.20) >DroAna_CAF1 169427 98 + 1 AAACAUCUC-CCCGUUUGACAUCCAGGUGUUACCAUCUUGCUCUCCUUGACCGUGUUUCUAAAUAUGGUUGCCGAGACAAUGCCGGCCACUUCCGACGC .........-.(((..((((((....)))))).....(((.((((..((((((((((....))))))))))..)))))))...)))............. ( -20.90) >DroPer_CAF1 222677 96 + 1 CGU---CUUCCUCAUCCGAUAUCUAGGUGUUACCAUCCUGCUCUCGCUGACCGUGUUUCUCAAUAUGGUUGCCGAGACAAUGCCGGCCACAUCCGACGC (((---(........(((.....((((((....)).)))).(((((..(((((((((....)))))))))..)))))......)))........)))). ( -24.79) >consensus CGU____U______UUUGAUAUCUAGGCGUUACCAUCUUGCUCUCGCUGACCGUGUUCCUCAAUAUGGUUGCCGAGACAAUGCCGGCCACCUCAGAUGC .........................(((((........((.(((((..(((((((((....)))))))))..))))))))))))............... (-19.57 = -19.35 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:09 2006