| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,079,451 – 14,079,548 |
| Length | 97 |
| Max. P | 0.506612 |
| Location | 14,079,451 – 14,079,548 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 77.69 |
| Mean single sequence MFE | -24.15 |
| Consensus MFE | -11.99 |
| Energy contribution | -13.18 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.50 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506612 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14079451 97 + 22407834 GGGCAUAUGGCAAAUGCUU-UUGCCAAAAGUUUUUAUUGCAAAUAUGUUUGC-GAACAUGUCGCGCAAUAUGGGCGG-GGGA--AAAAGCAAUUAAGAAGAG ..((...(((((((....)-))))))....((((..((((...(((((((((-((.....))))).)))))).))))-..))--))..))............ ( -25.60) >DroSec_CAF1 168077 96 + 1 GGGCAUAUGGCAAAUGCU--UUGCCAAAAGUUUUUAUUGCAAAUAUGUUUGC-GAACAUGUCGCGCAAU--GGGCGG-GGGGAGGAAAGCAAUUAAGAAGAG .((((...(((....)))--.))))....((((((.(((((((....)))))-)).(.(.((.(((...--..))).-)).).)))))))............ ( -25.10) >DroEre_CAF1 170820 95 + 1 GGGCAUAUGGCAAAUGCUU-AUGCCAAAAGUUUUUAUUGCAAAUAUGUUUGC-GAGCAUGUCGCGAAAU--GGGCGG-GGGG--AAAAGCAAUUAAGAAGAG .((((((.(((....))))-)))))....((((((.((((...(((.(((((-((.....)))))))))--).))))-....--))))))............ ( -26.30) >DroYak_CAF1 178669 95 + 1 GGGCAUAUGGCAAAUGCUU-UUGCCAAAAGUUUUUAUUGCAAAUAUGUUUGC-GAACAUGUCGCGGAGU--GGGCGG-GUAC--GAAAGCAAUUAAGAAGAG .((((...(((....))).-.))))....((((((.((((...(((.(((((-((.....)))))))))--).))))-....--))))))............ ( -23.80) >DroAna_CAF1 167393 95 + 1 GGGCGUAUGGCAGAUGCUUUUUGCCAAAAGUUUUUAUUACGAAUAUGUUAGCCAAACACGCCGGCAAGC--AGACAAAGGGA--AAAAGCAAUUAAG---AG ..((.....))...((((((((.((....((.......)).....((((.(((.........))).)))--)......)).)--)))))))......---.. ( -20.00) >DroPer_CAF1 220295 83 + 1 CGGCAUAUGGAUCAGGCUUUCUGCCAAAUGUUUUUACUGCGAAUAUGUUUGC-AAAAAGAU------------GAGG-GCAG--AACAGCAAUUCAC---AG .......(((((...((((((((((..((.((((...((((((....)))))-))))).))------------...)-))))--)).))).))))).---.. ( -24.10) >consensus GGGCAUAUGGCAAAUGCUU_UUGCCAAAAGUUUUUAUUGCAAAUAUGUUUGC_GAACAUGUCGCGAAAU__GGGCGG_GGGG__AAAAGCAAUUAAGAAGAG .((((...(((....)))...))))....((((((.......(((((((.....)))))))(((.........)))........))))))............ (-11.99 = -13.18 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:06 2006