Locus 4921

Sequence ID 2L_DroMel_CAF1
Location 14,076,321 – 14,076,419
Length 98
Max. P 0.897840
window7809

overview

Window 9

Location 14,076,321 – 14,076,419
Length 98
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 85.00
Mean single sequence MFE -30.13
Consensus MFE -24.42
Energy contribution -25.11
Covariance contribution 0.69
Combinations/Pair 1.04
Mean z-score -2.71
Structure conservation index 0.81
SVM decision value 1.00
SVM RNA-class probability 0.897840
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14076321 98 + 22407834
---------------------GCUUUUUCAAUUGCCAUU-UUUGCCGCACGUGAGUGAGCUGCCGUCCAAAUCCCACCGCAGCUGGCAUCCGUUGCGGCAGGAAAUACUUUAUACAAAAA
---------------------................((-(((((((((((.((((.((((((.((.........)).)))))).)).)))).)))))))))))................ ( -33.10)
>DroSec_CAF1 164998 92 + 1
---------------------GCUUUUUCAAUUGCCAUU-UUUGCCGCACGUGAGUGAGCUGCCGACCAAAUCCCACCGCAGCUGGCAUCCGUUGCGGCAGGAAAUACUUUAUA------
---------------------................((-(((((((((((.((((.((((((.(...........).)))))).)).)))).)))))))))))..........------ ( -31.70)
>DroSim_CAF1 166117 92 + 1
---------------------GCUUUUUCAAUUGCCAUU-UUUGCCGCACGUGAGUGAGCUGCCGACCAAAUCCCACCGCAGCUGGCAUCCUUUGCGGCAGGAAAUACUUUAUA------
---------------------................((-(((((((((...((((.((((((.(...........).)))))).)).))...)))))))))))..........------ ( -28.70)
>DroEre_CAF1 167708 92 + 1
---------------------GCUUUUCCAAUUGCCAUU-UUUGCCGCACGUGAGUGAGCUGCCGACCAAAUCCCACCGCAGCUGGCAUCCGUUGCGGCAGGAAAUACUUUAUA------
---------------------................((-(((((((((((.((((.((((((.(...........).)))))).)).)))).)))))))))))..........------ ( -31.70)
>DroYak_CAF1 175454 92 + 1
---------------------GCUGUUUCAAUUGCCAUU-UUUGCCGCACGUGAGUGAGCUGCCGACCAAAUCCCACCGCAGCUGGCAUCCGUUGCGGCAGGAAAUAAUUUAUA------
---------------------................((-(((((((((((.((((.((((((.(...........).)))))).)).)))).)))))))))))..........------ ( -31.70)
>DroAna_CAF1 164408 114 + 1
AAACAUCCCAAAAAGUUUGUUCAUUUUCCAAUUGAAAUUUUUUGCCCCACAUGAGUGAGUAACCAACCAAAUCCCACCGCAGCUCGCAUCCGCUGCGGCAGGAAAUACUUUAUA------
...........(((((...((((.........))))((((((((((.(((....))).....................(((((........))))))))))))))))))))...------ ( -23.90)
>consensus
_____________________GCUUUUUCAAUUGCCAUU_UUUGCCGCACGUGAGUGAGCUGCCGACCAAAUCCCACCGCAGCUGGCAUCCGUUGCGGCAGGAAAUACUUUAUA______
....................................(((.(((((((((((.((((.((((((...............)))))).)).)))).))))))))).))).............. (-24.42 = -25.11 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:05 2006