| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,073,425 – 14,073,526 |
| Length | 101 |
| Max. P | 0.750497 |
| Location | 14,073,425 – 14,073,526 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 77.14 |
| Mean single sequence MFE | -20.79 |
| Consensus MFE | -16.32 |
| Energy contribution | -17.43 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.750497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14073425 101 + 22407834 -GCGGUGAAAGUACAAAUAAAAC-AACUCCCAGGCGCAUUAAUUAAAAAGGAGCAGACAAAGCGAGGCGCAGAUUAAUUGGCAUCAGUGGGAGA----------AAGACAGUG------ -......................-..((((((.((((.....((......))((.......))...)))).(((........)))..)))))).----------.........------ ( -16.60) >DroPse_CAF1 200787 108 + 1 ----GUAAGAGUACAAAUAAAAC-AACUCCCGGGCGCAUUAAUUAAAAAGGCGCAGACAAAGCGAGGCGUAGAUUAAUUGGCGUCAAUGGGAGCCGAGCCGGCAAAAGAAGCG------ ----......((...........-...((((.(((((..(((((((....((((.(......)...))))...))))))))))))...))))((((...)))).......)).------ ( -26.70) >DroWil_CAF1 229462 99 + 1 AUUAAACAAAAUAAAAUAAAAACAAACUCCCAGGCGCAUUAAUUAAAAAGGCGCAGACAAAGCGAGUGGCAGAUUAAUUGGCGUCAAUAAGA------------AGGAUGA-------- ................................((((((((((((.......(((.......))).......)))))))..))))).......------------.......-------- ( -13.94) >DroYak_CAF1 172442 107 + 1 -GCGGUGAAAGUACAAAUAAAAC-AACUCCCAGGCGCAUUAAUUAAAAAGGAGCAGACAAAGCGAGGCGCAGAUUAAUUGGCAUCAGUGGGAGA----------AAGACAGUAAGGAGA -......................-..((((((.((((.....((......))((.......))...)))).(((........)))..)))))).----------............... ( -16.60) >DroAna_CAF1 160021 93 + 1 ---------AGUGCAAAUAAAAC-AACUCCCAGGCGCAUUAAUUAAAAAGCAGCAGACAAAGCGAGGCUCAGAUUAAUUGGCGUCAAUGGGAGA----------AAGACAGCG------ ---------..............-..((((((((((((((((((....(((.((.......))...)))..)))))))..)))))..)))))).----------.........------ ( -24.20) >DroPer_CAF1 212930 108 + 1 ----GUAAGAGUACAAAUAAAAC-AACUCCCGGGCGCAUUAAUUAAAAAGGCGCAGACAAAGCGAGGCGUAGAUUAAUUGGCGUCAAUGGGAGCCGAGCCGGCAAAAGAAGCG------ ----......((...........-...((((.(((((..(((((((....((((.(......)...))))...))))))))))))...))))((((...)))).......)).------ ( -26.70) >consensus ____GUAAAAGUACAAAUAAAAC_AACUCCCAGGCGCAUUAAUUAAAAAGGAGCAGACAAAGCGAGGCGCAGAUUAAUUGGCGUCAAUGGGAGA__________AAGACAGCG______ ..........................(((((((((((..(((((((....((((.(......)...))))...))))))))))))..)))))).......................... (-16.32 = -17.43 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:04 2006