Locus 4913

Sequence ID 2L_DroMel_CAF1
Location 14,062,735 – 14,062,830
Length 95
Max. P 0.796059
window7794

overview

Window 4

Location 14,062,735 – 14,062,830
Length 95
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 80.20
Mean single sequence MFE -28.94
Consensus MFE -19.24
Energy contribution -19.93
Covariance contribution 0.70
Combinations/Pair 1.13
Mean z-score -1.79
Structure conservation index 0.66
SVM decision value 0.60
SVM RNA-class probability 0.796059
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14062735 95 + 22407834
--GGCAGCAGCAGC------AACAUAAUGCACGCCGGCAACAUAUUGUCACUUUGACACAUAAAACCACUCACGAGUGGGAUGCG-AGUAUUUUGUGGGCCGG---A-------
--(((.((....))------.(((.(((((.(((.(....)....((((.....)))).......(((((....)))))...)))-.))))).)))..)))..---.------- ( -28.20)
>DroGri_CAF1 181788 87 + 1
CCGGCAGCAGCAGC---AACUUCAUAAUGCACGCCGGCAACAUAUUGUCACUUUGACACAUAAAACCACUCAAGGGUGGGC------AUAUUUUC-----------C-------
.((((.(((.....---..........)))..))))((.......((((.....)))).......(((((....)))))))------........-----------.------- ( -21.06)
>DroSec_CAF1 151624 95 + 1
--GGCAGCAGCAGC------AACAUAAUGCACGCCGGCAACAUAUUGUCACUUUGACACAUAAAACCACUCACGAGUGGGAUGCG-AGUAUUUUGUGGGCCGG---A-------
--(((.((....))------.(((.(((((.(((.(....)....((((.....)))).......(((((....)))))...)))-.))))).)))..)))..---.------- ( -28.20)
>DroEre_CAF1 153514 89 + 1
--GGCAGCAGCAGC------AACAUAAUGCACGCCGGCAACAUAUUGUCACUUUGACACAUAAAACCACUCACGGGUGGGA-------UAUUUUGUGGGCCGG---A-------
--.((....)).((------(......)))...(((((.......((((.....))))((((((((((((....)))))..-------..))))))).)))))---.------- ( -27.90)
>DroYak_CAF1 161965 95 + 1
--GGCAGCAACAGCAACGGCAACAUAAUGCACGCCGGCAACAUAUUGUCACUUUGACACAUAAAACCACUCACGGGUGGGA-------UAUUUUGUGGGCCGG---A-------
--.(((((....))...(....)....)))...(((((.......((((.....))))((((((((((((....)))))..-------..))))))).)))))---.------- ( -30.30)
>DroPer_CAF1 200886 109 + 1
--AGCAACAGAGGC---AGGCCCAUAAUGCACGCCGGCAACAUAUUGUCACUUUGACACAUAAAACCACUCAUGAGUGGGAUGUGGGAUAUUUUGCGGGCCUACGAAGCUGUUG
--..((((((.(..---((((((.(((......(((((((....))))).......(((((....(((((....))))).))))))).....))).)))))).)....)))))) ( -38.00)
>consensus
__GGCAGCAGCAGC______AACAUAAUGCACGCCGGCAACAUAUUGUCACUUUGACACAUAAAACCACUCACGAGUGGGA_______UAUUUUGUGGGCCGG___A_______
...(((.....................)))..(((.((((.((((((((.....)))).......(((((....)))))........)))).)))).))).............. (-19.24 = -19.93 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:52 2006