Locus 4910

Sequence ID 2L_DroMel_CAF1
Location 14,050,507 – 14,050,597
Length 90
Max. P 0.795166
window7791

overview

Window 1

Location 14,050,507 – 14,050,597
Length 90
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 78.70
Mean single sequence MFE -19.90
Consensus MFE -12.32
Energy contribution -13.22
Covariance contribution 0.89
Combinations/Pair 1.31
Mean z-score -1.76
Structure conservation index 0.62
SVM decision value 0.60
SVM RNA-class probability 0.795166
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14050507 90 - 22407834
CA-----UCAGUGCGGAAUCUUUGAGGUAACUAUUUUUAUAAUUCGUUUAUGCAUUUGAAAA-GUUUAUUUUCCGUGCUCUAGUUGCCCAAGGCUU
..-----............(((((.((((((((.....((((.....))))((((..(((((-.....))))).))))..)))))))))))))... ( -19.50)
>DroSec_CAF1 139362 90 - 1
CA-----UCAGUGCGGAAUCUUUGAGGUAACUAUUUAUAUAAUUCGUUUAUGCAUUUGAAAA-GUUUAUUUUCCGUGCGCUAGUUGCCCAAGGCUU
..-----............(((((.((((((((.....((((.....))))((((..(((((-.....))))).))))..)))))))))))))... ( -20.00)
>DroSim_CAF1 142573 90 - 1
CA-----UCAGUGCGGAAUCUUUGAGGUAACUAUUUAUAUAAUUCGUUUAUGCAUUUGAAAA-GUUUAUUUUCCGUGCGCUAGUUGCCCAAGGCUU
..-----............(((((.((((((((.....((((.....))))((((..(((((-.....))))).))))..)))))))))))))... ( -20.00)
>DroEre_CAF1 141571 90 - 1
CA-----UCAGUGUGGAAUCUUUGAGGUAACUAUUUAUAUAAUUCGUUUAUGCAUUUGAAGA-GUUUAUUUUCCGUGCGCUAGUUGCCCAAGGCUU
..-----............(((((.((((((((.....((((.....))))((((..(((((-.....))))).))))..)))))))))))))... ( -20.10)
>DroWil_CAF1 196788 70 - 1
--------------------CUUGUGGUAACUAUGUAUACUAUACAAGUAUAUAUAUAAAUAUGCAUAGUUUUCAUUUA------CCUCAAGGUUU
--------------------((((.(((((..(((...(((((....((((((......)))))))))))...))))))------)).)))).... ( -17.20)
>DroYak_CAF1 149179 95 - 1
CGUGGAUUCCGUGUGGAAUUUUUGAGGUAACUAUUUAUAUAAUUCGUUUAUGCAUUUGAAAA-GUUUAUUUUCCGUGUGCUAGUUGCCCAAGGCUU
....((((((....))))))((((.((((((((.....((((.....))))((((..(((((-.....)))))...)))))))))))))))).... ( -22.60)
>consensus
CA_____UCAGUGCGGAAUCUUUGAGGUAACUAUUUAUAUAAUUCGUUUAUGCAUUUGAAAA_GUUUAUUUUCCGUGCGCUAGUUGCCCAAGGCUU
...................(((((.((((((((.....((((.....))))((((..(((((......))))).))))..)))))))))))))... (-12.32 = -13.22 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:49 2006