Locus 491

Sequence ID 2L_DroMel_CAF1
Location 1,477,553 – 1,477,652
Length 99
Max. P 0.569946
window785

overview

Window 5

Location 1,477,553 – 1,477,652
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 92.38
Mean single sequence MFE -29.72
Consensus MFE -24.82
Energy contribution -25.40
Covariance contribution 0.58
Combinations/Pair 1.11
Mean z-score -1.73
Structure conservation index 0.84
SVM decision value 0.07
SVM RNA-class probability 0.569946
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1477553 99 + 22407834
AGCACAGGAUUUGGGCACCCGAUACGCCAUUCUUGGCCUAAUUGGAUGGGCAAAUGUUAAGCAUUCCGUUUGAAUAGCAAUCUUCGGGGCUUAAAGACU
.....((..(((((((.(((((...((((....))))(((.(..((((((...(((.....)))))))))..).)))......))))))))))))..)) ( -33.60)
>DroSec_CAF1 95506 99 + 1
AGCUCAGGAUUUGGGCACCCGAUACGCCAUUCUUGGCCUAAUUGGAUGGGCAAAUGUUAAGCAUUCCGUUUGAAUAGCAAUCUUCGGGGCUUAAAGACU
.....((..(((((((.(((((...((((....))))(((.(..((((((...(((.....)))))))))..).)))......))))))))))))..)) ( -33.60)
>DroSim_CAF1 97794 99 + 1
GGCACAGGAUUUGGGCACCCGAUACGCCAUUCUUGGCCUAAUUGGAUGGGCAAAUGUUAAGCAUUCCGUUUGAAUAGCAAUCUUCGGGGCUUAAAGACU
.....((..(((((((.(((((...((((....))))(((.(..((((((...(((.....)))))))))..).)))......))))))))))))..)) ( -33.60)
>DroEre_CAF1 101401 89 + 1
------GGAUUUGG----CCGAUACGCCAUUCUUGGCCUAAUUGGAUGGGCAAAUGUUAAGCAUUCCGUUUGAAUAGCAAUCUUGGGGGCUUAAAGACU
------(..(((((----((.....((((....))))(((.(..((((((...(((.....)))))))))..).)))..........))).))))..). ( -22.40)
>DroYak_CAF1 98185 99 + 1
AGCACAGGAUUUGGGCACCCGAUACGCCAUUCUUGGCCUAAUUGGAUGGGCAAAUGUUAAGCAUUCCGUUUGAAUAGCAAUCUUGGGGGCUUAAAGACU
.....((..(((((((.(((((...((((....))))(((.(..((((((...(((.....)))))))))..).))).....))))).)))))))..)) ( -31.50)
>DroAna_CAF1 95629 97 + 1
ACGACAGGAUUUGGGC--CCGAUACGCCAUUCUUGGCCUAAUUGGAUGGGCAAAUGUUAAGCGUCCCGUUUGAAAAGCAAUCUUAAGUGCUUAAAGAUU
..........((((((--(.((........))..)))))))(..((((((...(((.....)))))))))..).(((((........)))))....... ( -23.60)
>consensus
AGCACAGGAUUUGGGCACCCGAUACGCCAUUCUUGGCCUAAUUGGAUGGGCAAAUGUUAAGCAUUCCGUUUGAAUAGCAAUCUUCGGGGCUUAAAGACU
......(..(((((((.(((.....((((....))))(((.(..((((((...(((.....)))))))))..).)))........))))))))))..). (-24.82 = -25.40 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:25 2006