Locus 4900

Sequence ID 2L_DroMel_CAF1
Location 13,993,482 – 13,993,581
Length 99
Max. P 0.835007
window7769

overview

Window 9

Location 13,993,482 – 13,993,581
Length 99
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.46
Mean single sequence MFE -33.45
Consensus MFE -26.47
Energy contribution -26.47
Covariance contribution -0.00
Combinations/Pair 1.07
Mean z-score -1.85
Structure conservation index 0.79
SVM decision value 0.73
SVM RNA-class probability 0.835007
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13993482 99 + 22407834
GCCAUCGUCG------------------AUGUC---GCUGUCGUCGCUUUUGUUGAUUGAUGCUGUCAAGCAUUUGUCAUUUGAUGACAGUUUUGUGUGCGAUUCGUUUCUCGCUCAUGA
(.((((...)------------------))).)---(((((((((((....))((((.((((((....)))))).))))...))))))))).(..((.((((........)))).))..) ( -31.30)
>DroVir_CAF1 140224 108 + 1
AACUCA------G------UCGCAGUCGCAGUCGCAGUCGCCGUCGCAGUUGCUGAUUGAUGCUGUCAAGCAUUUGUCAUUUGAUGACAGUUUUGUGCGCAAUUCGUUUCUCGCUCAUGA
...(((------.------..((((..((.(((((((..((....))..))))((((.((((((....)))))).))))......))).(..(((....)))..)))..)).))...))) ( -26.70)
>DroPse_CAF1 90821 114 + 1
GCCAUAGCUGUCG------UCUCAGUCGCCGUCGCUGUUGUCGUCGCAGUUGCUGAUUGAUGCUGUCAAGCAUUUGUCAUUUGAUGACAGUUUUGUGUGCGAUUCGUUUCUCGCUCAUGA
.....((((((((------((.........((.(((((.......))))).))((((.((((((....)))))).))))...))))))))))(..((.((((........)))).))..) ( -36.90)
>DroYak_CAF1 90604 93 + 1
GCCAUCGUCG---------------------------CUGUCGUCGCUUUUGUUGAUUGAUGCUGUCAAGCAUUUGUCAUUUGAUGACAGUUUUGUGUGCGAUUCGUUUCUCGCUCAUGA
.........(---------------------------((((((((((....))((((.((((((....)))))).))))...))))))))).(..((.((((........)))).))..) ( -30.10)
>DroAna_CAF1 79252 120 + 1
GCCAUCGUCGGCAUCUCAGUCUCAGUCGCCGUCGCUGCUGUCGUCGCAGUUGUUGAUUGAUGCUGUCAAGCAUUUGUCAUUUGAUGACAGUUUUGUGUGCGAUUCGUUUCUCGCUCAUGA
.....((.((((..((.......))..)))).))..(((((((((((....))((((.((((((....)))))).))))...))))))))).(..((.((((........)))).))..) ( -38.80)
>DroPer_CAF1 97883 114 + 1
GCCAUAGCUGUCG------UCUCAGUCGCCGUCGCUGUUGUCGUCGCAGUUGCUGAUUGAUGCUGUCAAGCAUUUGUCAUUUGAUGACAGUUUUGUGUGCGAUUCGUUUCUCGCUCAUGA
.....((((((((------((.........((.(((((.......))))).))((((.((((((....)))))).))))...))))))))))(..((.((((........)))).))..) ( -36.90)
>consensus
GCCAUAGUCG__G______UCUCAGUCGCCGUCGCUGCUGUCGUCGCAGUUGCUGAUUGAUGCUGUCAAGCAUUUGUCAUUUGAUGACAGUUUUGUGUGCGAUUCGUUUCUCGCUCAUGA
.....................................((((((((((....))((((.((((((....)))))).))))...))))))))..(..((.((((........)))).))..) (-26.47 = -26.47 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:29 2006