| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,470,422 – 1,470,517 |
| Length | 95 |
| Max. P | 0.500000 |
| Location | 1,470,422 – 1,470,517 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 74.89 |
| Mean single sequence MFE | -35.33 |
| Consensus MFE | -26.17 |
| Energy contribution | -26.50 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.70 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1470422 95 + 22407834 UUUUCACUUUUUCCUGGGGGGCACGCGCACGCUCUGGCACUUCCUUGCGCCUUUUUGGCCACAGAAGUGGAACAAAUGGUCGCAGGACGAGAAAA------------------ (((((.......((.(((.(((....)).).))).))....((((.(((((..((((.((((....))))..)))).)).))))))).)))))..------------------ ( -29.10) >DroVir_CAF1 138330 101 + 1 ACUUCAC------U-UGGGGGCACGCGCACGCUCUGGCACUUCCUUGCGCCUGCCUGGCCACAGAAGUGGAACAAAUGGGCGCAGGACGUGCACA-----AGGAGGAGAAGGC .((((.(------(-(((((((........))))).((((.((((.(((((((..((.((((....))))..))..))))))))))).)))).))-----))))))....... ( -44.30) >DroPse_CAF1 117589 87 + 1 -----CUUUGUUCCUGUGGGGCACGCGCACGCUCUGGCACUUCCUUGCGCCUGCCUGGCCACAGAAGUGGAACAAAUGGGCGCAGGACGAGG--------------------- -----((((((.(((((((((((.(((((.((....)).......))))).)))))..((((....))))..........))))))))))))--------------------- ( -34.60) >DroGri_CAF1 116862 107 + 1 ACUUCAC------UUUGGGGGCACGCGCACGCUCUGGCACUUCCUUGCGCCUGCCUGGCCACAGAAGUGGAACAAAUGGGCGCAGGACGUGAAAACGUGAAUGGGGAUGAGCC .......------....(((((........)))))(((.(.((((((((((((..((.((((....))))..))..)))))))...((((....))))....))))).).))) ( -37.10) >DroWil_CAF1 130375 93 + 1 -------------UCGUGGGGCACGCGCACGCUCUGGCACUUCCUUGCGCCUGCCUGGCCACAGAAGUGGAACAAAUGGGCGCAGGACGAGAAUAACCAAGUG-------GUC -------------(((((((((........)))))........((((((((((..((.((((....))))..))..)))))))))))))).....(((....)-------)). ( -32.30) >DroPer_CAF1 115581 87 + 1 -----CUUUGUUCCUGUGGGGCACGCGCACGCUCUGGCACUUCCUUGCGCCUGCCUGGCCACAGAAGUGGAACAAAUGGGCGCAGGACGAGG--------------------- -----((((((.(((((((((((.(((((.((....)).......))))).)))))..((((....))))..........))))))))))))--------------------- ( -34.60) >consensus _____AC______CUGGGGGGCACGCGCACGCUCUGGCACUUCCUUGCGCCUGCCUGGCCACAGAAGUGGAACAAAUGGGCGCAGGACGAGAA_A__________________ .................(((((........)))))....(.((((.(((((((..((.((((....))))..))..))))))))))).)........................ (-26.17 = -26.50 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:24 2006