Locus 49

Sequence ID 2L_DroMel_CAF1
Location 209,806 – 209,906
Length 100
Max. P 0.540487
window69

overview

Window 9

Location 209,806 – 209,906
Length 100
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 79.67
Mean single sequence MFE -28.43
Consensus MFE -15.01
Energy contribution -14.98
Covariance contribution -0.02
Combinations/Pair 1.22
Mean z-score -1.92
Structure conservation index 0.53
SVM decision value 0.01
SVM RNA-class probability 0.540487
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 209806 100 + 22407834
AGCUUUGCUUGAGGAGGCCUGCGAACGCUCCCUCUUCCUUCAGUUCCACUAAUUAAAGUGGAAUAAAAACGAUGGACACCUGGAAA-AAACA--AAGCCAAUA-
.((((((...(((((((...((....))..))))))).....((((((((......))))))))......................-...))--)))).....- ( -28.60)
>DroPse_CAF1 2033 99 + 1
GGCCCUGCUGGAGGAGGCCUGCGAACGCUCGCUCUUCCUGACAUACCACUAACCUGGGUCGA---AACUGGAAGGAAACCGGAAACCAAGCC--AAGCCAAAAG
(((...(((((((((((...((((....)))).))))))(((...(((......))))))..---..((((.......))))...)).))).--..)))..... ( -29.20)
>DroSec_CAF1 2099 100 + 1
AGCUUUGCUUGAGGAGGCCUGCGAACGCUCCCUCUUUCUUCAGUUCCACUAAUUCAAGUGGAAUAAAAUCGAUGGACACCUGGAAA-AAACA--AAGCCAAUA-
.((((((...(((((((...((....))..))))))).((((((((((((......))))))).....((....))...)))))..-...))--)))).....- ( -27.30)
>DroSim_CAF1 1681 100 + 1
AGCUUUGCUUGAGGAGGCCUGCGAACGCUCCCUCUUUCUUCAGUUCCACUAAUUCAAGUGGAAUAAAAUCGAUGGACACCUGGAAA-AAACA--AAGCCAAUA-
.((((((...(((((((...((....))..))))))).((((((((((((......))))))).....((....))...)))))..-...))--)))).....- ( -27.30)
>DroYak_CAF1 2069 102 + 1
AGUUUUGCUUGAAGAGGCCUGCGAGCGCUCCCUCUUCCUUCAGUUCCACUAAUUCAAAUGAAUUGAAAUCGAUGGACACCUGGAAA-AAGCAAAAAGCCAAAA-
..(((((((((((((((...((....))..))))))).(((((.(((((...(((((.....)))))...).))))...)))))..-))))))))........- ( -28.30)
>DroPer_CAF1 2033 99 + 1
GGCCCUGCUGGAGGAGGCCUGCGAGCGCUCGCUCUUCCUGACAUACCACUAACCUGGGUCGA---AACUGGAAGGAAACCGGAAACCAAGCC--AAGCCAAAAG
(((...(((((((((((...((((....)))).))))))(((...(((......))))))..---..((((.......))))...)).))).--..)))..... ( -29.90)
>consensus
AGCUUUGCUUGAGGAGGCCUGCGAACGCUCCCUCUUCCUUCAGUUCCACUAAUUCAAGUGGAAUAAAAUCGAUGGACACCUGGAAA_AAACA__AAGCCAAAA_
..........(((((((...((....))..)))))))........(((((......)))))............((.....((........)).....))..... (-15.01 = -14.98 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:10 2006