| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,984,173 – 13,984,289 |
| Length | 116 |
| Max. P | 0.815638 |
| Location | 13,984,173 – 13,984,289 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 77.64 |
| Mean single sequence MFE | -53.85 |
| Consensus MFE | -28.11 |
| Energy contribution | -27.83 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815638 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13984173 116 + 22407834 CAGUAUAGGCUCUCUGGCGUCGCUGUUGCGGUUGCCGUCGCUGUUUGCGACGCCUUCGGUUCUCCCCGCAGCAGAAUGUUCUCAAUCUCUGCCACAUGCUCGGUGUCUGCUCCAUU ((((((.(((....((((....(((((((((..(.((((((.....)))))).)...((....)))))))))))..((....))......))))...)))..))).)))....... ( -36.30) >DroPse_CAF1 79058 116 + 1 CGGUGUAGGCCCUGGGGCGUCGCUGCUGCGGCUGUCGGCGUUGCUUACGACGGCGGCGCCGGUCGCCACAGCAGAAUGUUCUCAGGCGCUGCCAGAGACCCGGCGCCUGCUCCAUC .((.((((((.(((((((((..((((((.(((..(((((((((((......)))))))))))..))).)))))).))))((((.(((...))).))))))))).)))))).))... ( -70.40) >DroYak_CAF1 81117 116 + 1 CAGUAUAGGCUCUCUGACGUCGCUGCUGCGGUUGCCGACGCUGUUUGCGGCGCCUUCGACUCUCCCCGCAGCAGAAGGUUCUCAGUCUCUGCCACAAGCUCGGCGCCUGCUCCAUU .....(((((...((((.....(((((((((..(.((((((((....)))))...))).).....))))))))).......)))).....(((........))))))))....... ( -39.80) >DroMoj_CAF1 102432 113 + 1 CGGUGUAGGCCCUCUGACGUCGCUGCUGCGGCUGCCGUCGCUGCUUGCGUCGCUGCCG---CUGGCCACAGCAGAGACGCUUCAAGCGCUGCCACAGCGUCGGCGUCUGCUCUAUC .((.((((((((..(((((((.((((((.((((((.((.((.((....)).)).)).)---).)))).)))))).))))..))).((((((...)))))).)).)))))).))... ( -51.20) >DroAna_CAF1 70403 116 + 1 CCGUGUAGGCUCUUUGGCGCCGCUGCUGUGGCUGGCGGCGCUGCUUGCGUCGUCGACGUUUUUCGCCGCAGCAGAAGGCUCUGAGUCGCUGCCACAGACUGGGCGUUUGCUCCAUC ..(((..(((..((..(.(((.((((((((((.((((((((.....))))))))((......))))))))))))..))).)..))..)))..)))....(((((....)).))).. ( -55.00) >DroPer_CAF1 87995 116 + 1 CGGUGUAGGCCCUGGGGCGUCGCUGCUGCGGCUGUCGGCGUUGCUUACGACGGCGGCGCCGGUCGCCACAGCAGAAUGUUCUCAGGCGCUGCCAGAGACCCGGCGCCUGCUCCAUC .((.((((((.(((((((((..((((((.(((..(((((((((((......)))))))))))..))).)))))).))))((((.(((...))).))))))))).)))))).))... ( -70.40) >consensus CGGUGUAGGCCCUCUGGCGUCGCUGCUGCGGCUGCCGGCGCUGCUUGCGACGCCGGCGCCUCUCGCCACAGCAGAAUGUUCUCAGGCGCUGCCACAGACUCGGCGCCUGCUCCAUC ..(.((((((.....(((....((((((.(((((.((.(((.....))).)).)).........))).))))))...)))..........(((........))))))))).).... (-28.11 = -27.83 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:25 2006