Locus 4891

Sequence ID 2L_DroMel_CAF1
Location 13,958,499 – 13,958,596
Length 97
Max. P 0.924897
window7753

overview

Window 3

Location 13,958,499 – 13,958,596
Length 97
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 81.02
Mean single sequence MFE -39.68
Consensus MFE -25.01
Energy contribution -26.47
Covariance contribution 1.45
Combinations/Pair 1.30
Mean z-score -2.84
Structure conservation index 0.63
SVM decision value 1.16
SVM RNA-class probability 0.924897
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13958499 97 + 22407834
CUGGCCAAUCUA-AACGGGGUUUCCUGUCCUUCUCGUAUGGAGAACGGAAGCCC-CAUGGAUUGGAUUUAGCGGC-AGCUGUGCUUAACUGCAGGAGCUG
....((((((((-...(((((((((.((.((((......)))).))))))))))-).)))))))).........(-((((.(((......))).).)))) ( -40.20)
>DroSec_CAF1 46268 97 + 1
CUGGCCAAUCUA-AACGGGGUUUCCUGUCCUUCUCGUAUGGAGAACGGAAGCCC-CAUGGAUUGGCUUUAGCGGC-AGCUGUGCUUUACUGCAGGAGCUG
..((((((((((-...(((((((((.((.((((......)))).))))))))))-).)))))))))).......(-((((.(((......))).).)))) ( -44.20)
>DroSim_CAF1 46388 97 + 1
CUGGCCAAUCUA-AACGGGGUUUCCUGUCCUUCUCGUAUGGAGAACGGAAGCCC-CAUGGAUUGGCUUUAGCGGC-AGCUGUGCUUUACUGCAGGAGCCU
..((((((((((-...(((((((((.((.((((......)))).))))))))))-).)))))))))).....(((-..((((........))))..))). ( -44.60)
>DroEre_CAF1 47335 97 + 1
CUGGCUAAGCUA-AACGGGGUUUCCUGUCCUUCUCGUAUGGAGAACGGAAGCCC-CGUGGAUUGGUUUUUGCGGC-AGCUGUGCUGGACUGCAGGAGUUG
...(((((....-.(((((((((((.((.((((......)))).))))))))))-)))...)))))(((((((((-(((...))))..)))))))).... ( -40.40)
>DroYak_CAF1 47660 96 + 1
CUGGCCAAUCUA-AACGGGGUUUCCUGUCCUUCUCGUAUGGAGAACGGAAGC-U-CGUGGAUUGGCUUUUGAGGC-AGCUGCGCUGUGCAGCAGGAGGUG
..((((((((((-....((((((((.((.((((......)))).))))))))-)-).))))))))))........-.(((((.....)))))........ ( -38.20)
>DroPer_CAF1 54787 93 + 1
CUCGUGAAACUGCUGCAGAGUUUCCUUUCCAUCUGAUCUGCAGAACGGAAGUGCAGAUUGAGUGGCUAU--CGGCUAUCGGCUCUCGGCU----GAGCC-
...(.((((((.......)))))))...((((..(((((((...((....)))))))))..))))....--.(((..(((((.....)))----)))))- ( -30.50)
>consensus
CUGGCCAAUCUA_AACGGGGUUUCCUGUCCUUCUCGUAUGGAGAACGGAAGCCC_CAUGGAUUGGCUUUAGCGGC_AGCUGUGCUUUACUGCAGGAGCUG
...(((((((((.....((((((((.((.((((......)))).))))))))))...)))))))))......(((...((((........))))..))). (-25.01 = -26.47 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:14 2006