| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,957,056 – 13,957,146 |
| Length | 90 |
| Max. P | 0.825639 |
| Location | 13,957,056 – 13,957,146 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 91.81 |
| Mean single sequence MFE | -19.45 |
| Consensus MFE | -15.80 |
| Energy contribution | -16.43 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.825639 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13957056 90 + 22407834 AAGAAAAGCGCAAGUCGAUUUGAAAUGAAAUCAAAACAAAAGUGACUACGAAAACAACUGGCGUAGUCGCGUUUUUGCACCGCAAUGACA .......((....)).(((((......))))).........(((((((((..(.....)..)))))))))(((.((((...)))).))). ( -22.70) >DroSec_CAF1 44877 85 + 1 AAGAAAAGCGCAAGUCGAUUCGA-----AAUCAAAACAAAAGCGACUACGAAAACAAGUGGCGUAGUCGGGUUUUUGCCCCGCAAUGACA .............((((((....-----.))).........(((((((((...(....)..)))))))((((....)))).))...))). ( -21.60) >DroSim_CAF1 44994 85 + 1 AAGAAAAGCGCAAGUCGAUUCGA-----AAUCAAAACAAAAGUGACUACGAAAACAAGUGGCGUAGUCGGGUUUUUGCCCCGCAAUGACA .............(((.(((((.-----...............(((((((...(....)..)))))))((((....)))))).)))))). ( -19.40) >DroEre_CAF1 45897 84 + 1 AAGAAAAGCGCAAGUCGAUUCGA-----AAUCAAAACAAAAGUGACAACGAAAACAACCGACGUAGUCGGGUUUUUGCCCC-CAAUGACA ..(((..((....))...)))..-----..(((..........(((.(((...........))).)))((((....)))).-...))).. ( -14.10) >consensus AAGAAAAGCGCAAGUCGAUUCGA_____AAUCAAAACAAAAGUGACUACGAAAACAACUGGCGUAGUCGGGUUUUUGCCCCGCAAUGACA .............(((((((........)))).........(((((((((...........)))))))((((....)))).))...))). (-15.80 = -16.43 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:13 2006