Locus 489

Sequence ID 2L_DroMel_CAF1
Location 1,448,375 – 1,448,481
Length 106
Max. P 0.906130
window783

overview

Window 3

Location 1,448,375 – 1,448,481
Length 106
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 85.78
Mean single sequence MFE -29.74
Consensus MFE -24.00
Energy contribution -23.68
Covariance contribution -0.32
Combinations/Pair 1.29
Mean z-score -1.99
Structure conservation index 0.81
SVM decision value 1.05
SVM RNA-class probability 0.906130
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1448375 106 + 22407834
CGAGG--GAAGGGAGUGUUAAAUGCUAUGUAAACUUGGCUGGAAAAACAGCCAGUCAACUUAUCAGCGUUU-GUUAUUUUUUUUACUCUCUGCUGGGCAAACGAACUCG
.(((.--.(((((((((.((((((((..((..(((.(((((......))))))))..)).....)))))))-).)))))))))..)))......(((........))). ( -30.60)
>DroSec_CAF1 66365 107 + 1
CGAGG--GAAGGGAGUGUUAAAUGCUAUGUAAACUUGGCUGGAAAAACAGCCAGUCAACUUAUCAGCGUUUUUUUAUUUUUUGUACUCUCUGCUGGGCAAACGAACUCG
.((((--(.((((((((..(((((((..((..(((.(((((......))))))))..)).....)))))))...))))))))...)))))....(((........))). ( -28.50)
>DroEre_CAF1 68805 103 + 1
CCAGC--CAAGGGAGUGUUAAAUGCUAUGUAAACUUGGCUGGAAAAACAGCCAGUCAACUUAUCAGCGUUU-UUUAUUU---UUACUCUCUGCCGGGCAAACGAACCCG
...((--(.((((((((..(((((((..((..(((.(((((......))))))))..)).....)))))))-.......---.))))))))....)))........... ( -31.50)
>DroYak_CAF1 67831 103 + 1
CGAGG--CAAGGGAGUGUUAAAUGCUAUGUAAACUUGGCUGGAAAAACAGCCAGUCAACUUAUCAGCGUUU-UUUAUUU---UCACUCUCCGCUGGGCAAACGAACCCG
...((--(..(((((((..(((((((..((..(((.(((((......))))))))..)).....)))))))-.......---.))))))).)))(((........))). ( -31.90)
>DroAna_CAF1 66563 96 + 1
CAGGGUAGAAGAGAGUGUUAAAUGCUAUGUAAACUUGGCUGGAAAAAC--UCAGCCAACUUAUCAGU-----------UUUUUUACUCUCUGCUGGGCAAACGAAGUUA
..(..(((.((((((((..(((.(((..((((..((((((((......--)))))))).)))).)))-----------)))..)))))))).)))..)........... ( -26.20)
>consensus
CGAGG__GAAGGGAGUGUUAAAUGCUAUGUAAACUUGGCUGGAAAAACAGCCAGUCAACUUAUCAGCGUUU_UUUAUUUUUUUUACUCUCUGCUGGGCAAACGAACUCG
.........((((((((..(((((((..((((..((((((((........)))))))).)))).)))))))............))))))))..((((........)))) (-24.00 = -23.68 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:23 2006